| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3031308 = | 518 (0.840) | 28 (0.050) | 12/98 | NT | 7.5% | coding (158/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | CP009273 | 3031324 = | 242 (0.450) | coding (142/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
Only 100 of 922 total aligned reads displayed.
AATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGC > CP009273/3031241‑3031375 | ctgcgccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtat > 1:15123401‑M1/68‑68 (MQ=255) aatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCCACGGCCTTTTCGACGCCGCTCAGtt > 1:10470093/1‑65 (MQ=255) aatCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGtt > 1:25441133/1‑65 (MQ=255) gccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctg > 1:29616916‑M1/64‑68 (MQ=255) gccgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctg > 1:18228138‑M1/64‑68 (MQ=255) atCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg < 1:639348/68‑1 (MQ=255) atCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg < 1:22864036/68‑1 (MQ=255) atCCGCGTTCCTTCGCGAAAAGCGGTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg < 1:50368502/68‑1 (MQ=255) tCCGCGTTCCTTCGCGATAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctc > 1:30079872/1‑66 (MQ=255) tCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg > 1:47127222/1‑67 (MQ=255) tCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTtgctg > 1:12360910/1‑67 (MQ=255) tCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTATTCGACGCCGCTCAGTtgctg > 1:47382036/1‑67 (MQ=255) cgtttatacgccagccggggagtacgcagtgcgcaagaactggaacgcagtgttaaaggtatgctgc > 1:34829207‑M1/62‑67 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTTTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGcc > 1:28565344/1‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGcc > 1:46500461/1‑68 (MQ=255) ccGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGcc > 1:41338438/1‑68 (MQ=255) gTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAgg < 1:47999033/67‑1 (MQ=255) tCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgca < 1:48422819/68‑1 (MQ=255) tCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgc < 1:28834522/67‑1 (MQ=255) tCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgc < 1:37418788/67‑1 (MQ=255) ccTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGgcag < 1:43404102/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:42633769/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:34301862/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:2684005/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:32756002/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:1556369/68‑1 (MQ=255) gcgAAAAGCGTTGTAAAGGAGCTCAACGGCCTTATCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAc < 1:35191484/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATAcat > 1:32308684/1‑66 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt > 1:33560428/1‑68 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt > 1:25844151/1‑68 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:48810648/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt > 1:28145875/1‑68 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt > 1:9057362/1‑68 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:30551761/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:36639149/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:23053806/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:21119586/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:20774653/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:40249110/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:43086853/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:44610103/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:5989382/68‑1 (MQ=255) gAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCt < 1:14571365/68‑1 (MQ=255) aaaGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCttt < 1:21819832/68‑1 (MQ=255) gCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAac > 1:11131010/1‑68 (MQ=255) gTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAac < 1:3830140/66‑1 (MQ=255) gTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAac < 1:9558446/66‑1 (MQ=255) gTAAAGGATCTCAACGTCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGc < 1:3562605/68‑1 (MQ=255) gTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGc < 1:18582477/68‑1 (MQ=255) gTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGc > 1:13510250/1‑68 (MQ=255) gTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGc < 1:27824775/68‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt < 1:29143824/68‑1 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt > 1:19037007/1‑68 (MQ=255) aaaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGt < 1:25218480/68‑1 (MQ=255) aaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGtt < 1:19754948/68‑1 (MQ=255) aaGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGtt < 1:45967889/68‑1 (MQ=255) aGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGtt > 1:38955908/1‑67 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:16038168/1‑68 (MQ=255) ggATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTcc > 1:39435639/1‑68 (MQ=255) gATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGATCCa > 1:11873713/1‑68 (MQ=255) aTCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAg > 1:7585422/1‑68 (MQ=255) ctcAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGtt < 1:17874037/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:51154834/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:41790420/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:17396459/68‑1 (MQ=255) cAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt < 1:21508573/68‑1 (MQ=255) agaactggaacgcagtgttaaaggtaTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt > 1:2469748‑M1/27‑68 (MQ=255) agaactggaacgcagtgttaaaggtaGGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt > 1:19365581‑M1/27‑68 (MQ=255) agaactggaacccagtgttaaagctaGGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCt > 1:26535816‑M1/27‑68 (MQ=255) aaCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:39815767/1‑68 (MQ=255) aaCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt < 1:31944932/68‑1 (MQ=255) aCGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCtt > 1:45656866/1‑67 (MQ=255) gCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGAGTTCGAGTTCTTgcgc > 1:49846662/1‑68 (MQ=255) cTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTgcgc > 1:5466699/1‑66 (MQ=255) cTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCa < 1:30926065/67‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:10066090/68‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:12792010/68‑1 (MQ=255) ttttCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACt < 1:16503521/68‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:42235208‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:27294445‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:2416475‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:49207301‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:20056273‑M2/57‑1 (MQ=255) tttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTg < 1:44047919‑M2/57‑1 (MQ=255) acgcagtgttaaaggtaTGCTGCCAGGGCAGCATACCTTTAACACTGCGGTCCAGTTCTTGCGCACt < 1:37685007‑M1/50‑1 (MQ=255) ttcgacgcggCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:23556617‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:20479040‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:36123252‑M2/58‑1 (MQ=255) ttcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGc < 1:8288848‑M2/58‑1 (MQ=255) tcgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCg < 1:8726171‑M2/59‑1 (MQ=255) cgacgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGt < 1:22412930‑M2/60‑1 (MQ=255) cgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:40578922‑M2/63‑1 (MQ=255) cgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:1690091‑M2/63‑1 (MQ=255) cgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:6744030‑M2/63‑1 (MQ=255) cgccgCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACt < 1:7067418‑M2/63‑1 (MQ=255) aggtaTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCg < 1:33055847‑M1/62‑1 (MQ=255) gTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTg > 1:11475324/1‑68 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTgg > 1:1382511‑M1/1‑67 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc < 1:4523718‑M1/68‑1 (MQ=255) TGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGc < 1:31364956‑M1/68‑1 (MQ=255) | AATAATCCGCGTTCCTTCGCGAAAAGCGTTGTAAAGGATCTCAACGGCCTTTTCGACGCCGCTCAGTTGCTGCCAGGGCAGCATACCTTTAACACTGCGTTCCAGTTCTTGCGCACTGCGTACTCCCCGGCTGGC > CP009273/3031241‑3031375 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |