| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3758457 = | NA (NA) | 173 (0.280) | 5/110 | NT | 16.0% | coding (2915/4134 nt) | rhsA | Rhs family protein, putative polymorphic toxin; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| ? | CP009273 | 3760580 = | 924 (1.490) | intergenic (+41/‑1) | yibA/rhsJ | HEAT‑domain lethality reduction protein; putative immunity protein for putative polymorphic toxin RhsA/Rhs‑family protein | |||||
Only 100 of 1445 total aligned reads displayed.
GCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCT > CP009273/3760513‑3760647 | gCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCTCGCCGGCACg < 1:13556746/68‑1 (MQ=255) cTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACgg > 1:25567393/1‑68 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGTATTCCCGCCGGCACGGt < 1:11308807/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:39878970/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:22555084/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:24294248/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGt > 1:14926494/1‑68 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:41786338/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:27407497/68‑1 (MQ=255) tATTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGt < 1:48917865/68‑1 (MQ=255) aTTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTg < 1:37232762/68‑1 (MQ=255) ttGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGc < 1:13049648/68‑1 (MQ=255) agatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctg > 1:23910436‑M2/65‑65 (MQ=255) agatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctg > 1:34018724‑M2/65‑65 (MQ=255) agatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctg > 1:21509530‑M2/65‑65 (MQ=255) agatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctg > 1:20647119‑M2/65‑65 (MQ=255) agatagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggagctg > 1:43107048‑M2/65‑65 (MQ=255) atagcgactttcgaccagcggctcttcattttgtgtccgcgtttagtgcaccacccggtgctg > 1:47702716‑M2/63‑63 (MQ=255) atagcgactttcgaccagcggctcttcatattgtgtccgcgtgtagtgcaccagccggtgctg > 1:7494940‑M2/63‑63 (MQ=255) tAAGCTGAAGCGTTCATAGCGTGAGTTGCCCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGa > 1:46519061/1‑68 (MQ=255) aGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGAt > 1:43776114/1‑66 (MQ=255) aGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGAt > 1:10798228/1‑66 (MQ=255) aGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGAt > 1:17138593/1‑66 (MQ=255) aGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGAt > 1:23398790/1‑66 (MQ=255) gCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGc > 1:48621537/1‑67 (MQ=255) aGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGAcc > 1:16672840/1‑68 (MQ=255) aGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGAcc > 1:28225984/1‑68 (MQ=255) aGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGAcc > 1:36330471/1‑68 (MQ=255) aGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGAcc > 1:18134627/1‑68 (MQ=255) cGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCg > 1:18869695/1‑67 (MQ=255) gTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGc < 1:4965287/68‑1 (MQ=255) gTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGc < 1:33268917/68‑1 (MQ=255) tAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGaa > 1:50736690/1‑68 (MQ=255) cGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGt > 1:35593028/1‑68 (MQ=255) cGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGt > 1:30835609/1‑68 (MQ=255) cGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGt > 1:24858081/1‑68 (MQ=255) cGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGt > 1:31442050/1‑68 (MQ=255) cGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGt > 1:12650890/1‑68 (MQ=255) cGTGAGTTG‑CCAATGCACAGAGGGGGATTCCCGCAGCCACGGTGCAGCAGCTCGACCGTCAGGAAAga > 1:38739219/1‑67 (MQ=255) gTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGt < 1:45727947/67‑1 (MQ=255) gTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGt < 1:36072939/67‑1 (MQ=255) aGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGaaa > 1:5393320/1‑68 (MQ=255) ttG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAt > 1:1948962/1‑67 (MQ=255) ttgtgtccgcgtgtagtgcaccagccggtgctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAAt > 1:35278877‑M2/33‑65 (MQ=255) cTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTg > 1:10011976/1‑67 (MQ=255) cTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTg > 1:15581249/1‑67 (MQ=255) gCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTg > 1:21148105/1‑67 (MQ=255) gCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGa < 1:6556908/68‑1 (MQ=255) cacaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGCCCGGATGGAAAGTGAAATCCTGGCTGa > 1:49299866/1‑67 (MQ=255) cacaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGa > 1:18505329/1‑67 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:47065838/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:41166964/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:39279613/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:44300034/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:40452271/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:9205462/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:30372920/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:12319351/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:26992239/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc > 1:16167869/1‑68 (MQ=255) acaGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGAcc < 1:31900191/68‑1 (MQ=255) caGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCg > 1:37672106/1‑68 (MQ=255) caGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCg > 1:25915655/1‑68 (MQ=255) aGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCgg > 1:8954138/1‑68 (MQ=255) gTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCggg > 1:6916126/1‑68 (MQ=255) gTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCggg > 1:8451382/1‑68 (MQ=255) gTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCggg > 1:42147899/1‑68 (MQ=255) gTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCggg > 1:8201339/1‑68 (MQ=255) gTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCggg > 1:22173386/1‑68 (MQ=255) gTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCggg > 1:51177659/1‑68 (MQ=255) gTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCggg > 1:26487283/1‑68 (MQ=255) gggggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCggg < 1:40689730/66‑1 (MQ=255) gggggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtg > 1:50271362/1‑68 (MQ=255) ggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagt > 1:29075372/1‑68 (MQ=255) ggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagt > 1:45165564/1‑68 (MQ=255) ggATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgag < 1:1441215/67‑1 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGCCCGGgtgagtga > 1:32178466/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga > 1:17957729/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga > 1:36817707/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga > 1:17453972/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga > 1:2524388/1‑68 (MQ=255) aTTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGgtgagtga > 1:2943460/1‑68 (MQ=255) agccggtgctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaa > 1:34546381‑M2/11‑68 (MQ=255) cgccgGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa > 1:3260130/1‑68 (MQ=255) ccggtgctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa > 1:5793706‑M2/9‑67 (MQ=255) ccggtgctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa > 1:38257446‑M2/9‑67 (MQ=255) ccggtgctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa > 1:4462428‑M2/9‑67 (MQ=255) ccggtgctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGaaa > 1:27843786‑M2/9‑67 (MQ=255) cggggctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgc < 1:48076296‑M2/61‑1 (MQ=255) ccgGCACGGTGCAGATGCTCGCCCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAg > 1:42713878/1‑67 (MQ=255) ccgGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAg > 1:46154821/1‑67 (MQ=255) ggtgctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgcc > 1:30038215‑M2/7‑68 (MQ=255) ggtgctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgcc > 1:34948551‑M2/7‑68 (MQ=255) ggtgctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgcc > 1:20313099‑M2/7‑68 (MQ=255) ggtgctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgcc > 1:19875489‑M2/7‑68 (MQ=255) gctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc > 1:28635682‑M2/4‑68 (MQ=255) ctGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc > 1:23040519‑M2/3‑67 (MQ=255) aCGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc > 1:13953031/1‑67 (MQ=33) aCGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc > 1:11726329/1‑67 (MQ=33) aCGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAgccgcc > 1:10407274/1‑67 (MQ=33) | GCTATTGATAAGCTGAAGCGTTCATAGCGTGAGTTG‑CCTATGCACAGTGGGGGATTCCCGCCGGCACGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCT > CP009273/3760513‑3760647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |