New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3920778 =607 (0.980)48 (0.100) 12/88 NT 9.4% coding (264/993 nt) asnA asparagine synthetase A
?CP009273 3920817 = 448 (0.920)coding (303/993 nt) asnA asparagine synthetase A

Only 100 of 1189 total aligned reads displayed.

AGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG  >  CP009273/3920750‑3920884
                                                                   |                                                                   
gggcaacggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccc                                                                     <  1:43047090‑M2/1‑1 (MQ=255)
  gcaacggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccc                                                                     <  1:46759849‑M2/1‑1 (MQ=255)
   ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:41880241/1‑68 (MQ=255)
   ccTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGAt                                                                  >  1:20455786/1‑68 (MQ=255)
       ggagaaagacggtcttcatcggggcgcAGGGCTGGACCCGGCCATGAAAGCCCGTCGCCCCGCTGaa                                                               <  1:14120500‑M1/40‑1 (MQ=255)
       ggagaaagacggtcttcatcgGGGCGAAGGGCTGTTCCCGCACATGAAAGCCCAACGCCCCGATGAAg                                                              <  1:37266910‑M1/47‑1 (MQ=255)
        gggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAg                                                              >  1:13727448/1‑67 (MQ=255)
        gggCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAg                                                              >  1:14517589/1‑67 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:37577305/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:39735729/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:31369503/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:12451017/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:28309021/1‑68 (MQ=255)
          gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           >  1:50695145/1‑68 (MQ=255)
           cAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc                                                           <  1:2474985/67‑1 (MQ=255)
            aaCACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt                                                         <  1:6596491/68‑1 (MQ=255)
             agacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTc                                                        <  1:2998953‑M2/14‑1 (MQ=255)
             acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTc                                                        <  1:43401758/68‑1 (MQ=255)
              gacggtcttcatcgGGGCGAAGGGCTGTACACGCCCATGAAAGCCCTTCGCCCCGATGCAGACCGTCt                                                       <  1:3574689‑M1/54‑1 (MQ=255)
              gacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCt                                                       <  1:12977895‑M1/54‑1 (MQ=255)
                   ccttcatcggggcgaagggcttacatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTtct                                                   <  1:23566195‑M2/19‑1 (MQ=255)
                     tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg                                                >  1:5164499/1‑68 (MQ=255)
                     tCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg                                                >  1:2316452/1‑68 (MQ=255)
                      cAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGt                                               <  1:19650454/68‑1 (MQ=255)
                         cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGCCCGTCTTTCTCCGTTGc                                            >  1:21289172/1‑68 (MQ=255)
                         cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGCCCGTCTGTCTCCGTTGc                                            >  1:6898907/1‑68 (MQ=255)
                         cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            >  1:28057309/1‑68 (MQ=255)
                          gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGc                                            >  1:30981845/1‑67 (MQ=255)
                          gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCa                                           <  1:39069261/68‑1 (MQ=255)
                             GGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTc                                        <  1:255459‑M1/68‑1 (MQ=255)
                               CGAAGGGCTGTACACGCACATGAACGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg                                       >  1:34445945‑M1/1‑67 (MQ=255)
                               CGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg                                       >  1:41389408‑M1/1‑67 (MQ=255)
                               CGAAGGGCTGTACACGCACATGAAAGCCCTGCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCg                                       >  1:50180975‑M1/1‑67 (MQ=255)
                                tAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:29531200‑M1/2‑67 (MQ=255)
                                gacgggctttcatgggcgggtacagcccttcgcccCGATGAAGACCGTCTTTCGCCGTTGCACTCgg                                      <  1:48329161‑M2/32‑1 (MQ=255)
                                gaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      <  1:47824706‑M2/32‑1 (MQ=255)
                                gaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      <  1:7934079‑M2/32‑1 (MQ=255)
                                gaagggcttgcatgtgcgtgtccagccctgCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      <  1:17944176‑M2/37‑1 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:328594‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:7530055‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:11873401‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:42602500‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:34880806‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:44634757‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:22752012‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:36730011‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:20778034‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:1564491‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:18339314‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:17319880‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCgg                                      >  1:5684358‑M1/1‑67 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt                                     >  1:41136011‑M1/1‑68 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt                                     >  1:8793136‑M1/1‑68 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt                                     >  1:30759494‑M1/1‑68 (MQ=255)
                                GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGt                                     >  1:15374854‑M1/1‑68 (MQ=255)
                                   GGGGTGTACACGCACATGAACGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGGACTCGGTCTa                                  <  1:2219957‑M1/68‑1 (MQ=255)
                                    GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGGCCGTCTTTCTCCGGTGCACTCGGTCTAt                                 <  1:25915488‑M1/68‑1 (MQ=255)
                                    GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:30227571‑M1/68‑1 (MQ=255)
                                    GGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:6003503‑M1/68‑1 (MQ=255)
                                     gctttcatgtgcgggtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 <  1:1156990‑M2/37‑1 (MQ=255)
                                     GCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt                                 >  1:27753487‑M1/1‑67 (MQ=255)
                                       TGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGt                               >  1:27339598‑M1/1‑67 (MQ=255)
                                          acacGCACATGAAAGCCCTTCGCCCCGATGAAGCCCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:31732987/1‑67 (MQ=255)
                                          acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:10540784/1‑67 (MQ=255)
                                          acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa                            >  1:18790624/1‑67 (MQ=255)
                                            acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         <  1:950139/68‑1 (MQ=255)
                                            acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         <  1:40277227/68‑1 (MQ=255)
                                            acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         <  1:33647191/68‑1 (MQ=255)
                                            acGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         <  1:380794/68‑1 (MQ=255)
                                            acGCACATGAAACCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCa                         <  1:39424690/68‑1 (MQ=255)
                                              gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:1218770/68‑1 (MQ=255)
                                              gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:26969246/68‑1 (MQ=255)
                                              gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt                       <  1:26287780/68‑1 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:9149125/1‑68 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:11038768/1‑68 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:40715132/1‑68 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:15089355/1‑68 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:16348346/1‑68 (MQ=255)
                                               cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTg                      >  1:19143860/1‑68 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGCAGACCGTCTTTCTCCGTTGTACTCGGTCTATGTTGACCAGTGGGa                   <  1:47400137/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTggg                    >  1:33208205/1‑67 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:45273808/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:38541310/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:13509752/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:29055852/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:44038736/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:20332617/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:49059821/68‑1 (MQ=255)
                                                  aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGa                   <  1:23900937/68‑1 (MQ=255)
                                                      ccccccTCCCCCCCTATCAAGACCGTCTTCCCCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg               <  1:26626700/65‑1 (MQ=255)
                                                      aaGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTgg               >  1:10002323/1‑68 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGCCTGGGa             >  1:8313451‑M2/12‑68 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:16962475‑M2/12‑68 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:25187059‑M2/12‑68 (MQ=255)
                                                        gcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa             >  1:36281136‑M2/12‑68 (MQ=255)
                                                          ccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAc           >  1:49752502‑M2/10‑68 (MQ=255)
                                                          ccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAc           >  1:35279030‑M2/10‑68 (MQ=255)
                                                             tcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg        <  1:46312013‑M2/62‑1 (MQ=255)
                                                                cccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTaa     >  1:32299374‑M2/4‑68 (MQ=255)
                                                                cccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTaa     >  1:33971999‑M2/4‑68 (MQ=255)
                                                                   |                                                                   
AGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGG  >  CP009273/3920750‑3920884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.