| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4156417 = | NA (NA) | 11 (0.020) | 3/112 | NT | NA | intergenic (+204/‑170) | murI/rrsB | glutamate racemase/16S ribosomal RNA of rrnB operon |
| ? | CP009273 | 4197929 = | NA (NA) | intergenic (‑469/‑146) | purH/rrsE | fused IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon | |||||
Only 100 of 904 total aligned reads displayed.
GTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTT > CP009273/4197864‑4197986 | gTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAAc < 1:34456623/67‑1 (MQ=255) tGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACt > 1:37550584/1‑66 (MQ=255) gACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGct < 1:23021135/68‑1 (MQ=255) gACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGct < 1:5954078/68‑1 (MQ=255) gACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGct < 1:31657473/68‑1 (MQ=255) ctctGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGctct < 1:40024828/68‑1 (MQ=255) ctctGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGctct < 1:30616043/68‑1 (MQ=255) tctGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCtt < 1:41269799/68‑1 (MQ=255) aaGAGGAAAGCGTAATATACTCCAACGCGCTACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACa < 1:16862300/68‑1 (MQ=17) aaGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACa > 1:34749609/1‑68 (MQ=255) aaGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACa < 1:30235612/68‑1 (MQ=255) agagGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACaa > 1:18778732/1‑68 (MQ=255) agagGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACaa > 1:23396010/1‑68 (MQ=255) agagGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACaa > 1:13516139/1‑68 (MQ=255) agagGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACaa > 1:47316679/1‑68 (MQ=255) gAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTa > 1:35521939/1‑68 (MQ=255) aaaGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAAttt < 1:42546258/66‑1 (MQ=255) aaaGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAAttt < 1:26656450/66‑1 (MQ=255) aaaGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTa > 1:24159262/1‑67 (MQ=255) cGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAg > 1:25451953/1‑67 (MQ=255) gTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGAc > 1:22763359/1‑68 (MQ=255) aaTATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACa < 1:10629973/67‑1 (MQ=255) aaTATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACa < 1:7582422/67‑1 (MQ=255) aaTATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACa < 1:44433282/67‑1 (MQ=255) aaTATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACa < 1:2767027/67‑1 (MQ=255) atatACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAAt < 1:39767933/68‑1 (MQ=255) atatACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAAt < 1:24586454/68‑1 (MQ=255) atatACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAAt < 1:45618619/68‑1 (MQ=255) tataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATc < 1:32933694/68‑1 (MQ=255) ataCGCCACCTCGCGACAGTGGGCTAAAGCGCGTCGAAACTGCTCTTTAACAATTTATCAGACAATCt < 1:48708343/68‑1 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:28282705/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:45929089/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:21193686/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:5164975/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:46722793/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:881302/1‑65 (MQ=255) ataCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCt < 1:10003957/68‑1 (MQ=255) ataAGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACaa > 1:21467176/1‑65 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt < 1:2897375/68‑1 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt < 1:3521816/68‑1 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt < 1:22313667/68‑1 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt < 1:20007155/68‑1 (MQ=255) aCGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgt > 1:12523875/1‑68 (MQ=255) cGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtg < 1:40786124/68‑1 (MQ=255) cGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtg < 1:15827476/68‑1 (MQ=255) cGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtg < 1:14413016/68‑1 (MQ=255) cGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtg < 1:13933359/68‑1 (MQ=255) gCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgt > 1:11165003/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:38969496/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:38091880/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:51022810/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:42972090/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:36008636/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:49053658/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:10260116/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:546773/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:17621502/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:29514798/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:14852642/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:19326278/1‑68 (MQ=255) ccACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCtgtgtg > 1:25939545/1‑68 (MQ=255) aCCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTggg < 1:17992000/68‑1 (MQ=255) aCCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTgg > 1:37052725/1‑67 (MQ=255) aCCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTgg > 1:43500348/1‑67 (MQ=255) aCCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTgg > 1:20414622/1‑67 (MQ=255) cTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCa < 1:19764222/68‑1 (MQ=255) ggcgACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACt < 1:40408683/67‑1 (MQ=255) cgcgACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACt < 1:2203684/68‑1 (MQ=255) cgcgACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACt < 1:6654685/68‑1 (MQ=255) cgcgACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACt < 1:46270245/68‑1 (MQ=255) gACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGa > 1:32333024/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:49500229/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:12977567/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:48246841/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:1164831/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:33896081/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:17123788/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:45170269/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:18443617/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:39362515/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:6965789/1‑68 (MQ=255) aCAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa > 1:36703276/1‑68 (MQ=255) aGTGCGCTAAAGCGCGTCGCAACTGCTGTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGa > 1:47900834/1‑68 (MQ=255) aGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGa > 1:16449322/1‑68 (MQ=255) aGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGa > 1:43856298/1‑68 (MQ=255) gTGCGCTAAAGCGCGTCGCAACTGCTCTTGAACAATTTATCAGACAATGGGTGGGGGCACTCGAAGAt > 1:49908270/1‑68 (MQ=17) gcgcTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGaa < 1:41812877/63‑1 (MQ=255) gcgcTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGa < 1:9405791/65‑1 (MQ=255) gcTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACgg > 1:50594225/1‑68 (MQ=255) gcTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACg < 1:8343581/67‑1 (MQ=255) tAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGa < 1:12062173/67‑1 (MQ=39) tAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt < 1:29914502/68‑1 (MQ=39) tAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt < 1:2376278/68‑1 (MQ=39) aaaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt > 1:42055363/1‑67 (MQ=37) aaaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGAt > 1:33300088/1‑67 (MQ=37) aaGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTc < 1:15303816/68‑1 (MQ=35) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:46965553/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:38581452/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:31069828/1‑68 (MQ=33) aGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCt > 1:27203666/1‑68 (MQ=33) | GTTGACTCTGAAAGAGGAAAGCGTAATATACGCCACCTCGCGACAGTGCGCTAAAGCGCGTCGCAACTGCTCTTTAACAATTTATCAGACAATCTGTGTGGGCACTCGAAGATACGGATTCTT > CP009273/4197864‑4197986 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |