New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 4615358488 (0.790)5 (0.010) 4/94 NT 1.2% coding (647/969 nt) serB 3‑phosphoserine phosphatase
?CP009273 = 4615477 402 (0.770)coding (766/969 nt) serB 3‑phosphoserine phosphatase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 817 total aligned reads displayed.

AAATTTACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGCCAATGACCTGCC  >  CP009273/4615411‑4615544
                                                                  |                                                                   
 aaTTTACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtc                                                                   >  1:42749491‑M2/1‑66 (MQ=255)
  aTTTACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtc                                                                   <  1:6307318‑M2/67‑3 (MQ=255)
   tttACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgc                                                                 >  1:1005629‑M2/1‑64 (MQ=255)
   tttACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgc                                                                 >  1:34420021‑M2/1‑64 (MQ=255)
   tttACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgc                                                                 >  1:24995857‑M2/1‑64 (MQ=255)
   tttACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgc                                                                 >  1:15404091‑M2/1‑64 (MQ=255)
   tttACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgc                                                                 >  1:9495575‑M2/1‑64 (MQ=255)
    ttACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcg                                                                >  1:30285518‑M2/1‑63 (MQ=255)
    ttACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgc                                                                 <  1:21631789‑M2/67‑5 (MQ=255)
     tACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgc                                                               <  1:4670393‑M2/68‑7 (MQ=255)
     tACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgc                                                               >  1:43037089‑M2/1‑62 (MQ=255)
     tACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgc                                                               <  1:43439281‑M2/68‑7 (MQ=255)
     tACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgc                                                               <  1:49087346‑M2/68‑7 (MQ=255)
     tACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgc                                                               <  1:12445949‑M2/68‑7 (MQ=255)
       ccGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgcag                                                             >  1:18674125‑M2/1‑60 (MQ=255)
        cGGTAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTCACTCGCCtcgcgcagg                                                            >  1:23498009‑M2/1‑59 (MQ=255)
        cGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgcagg                                                            >  1:50357138‑M2/1‑59 (MQ=255)
        cGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgcagg                                                            >  1:24836885‑M2/1‑59 (MQ=255)
        cGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgcagg                                                            >  1:39318804‑M2/1‑59 (MQ=255)
        cGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgcagg                                                            >  1:2837780‑M2/1‑59 (MQ=255)
        cGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgcagg                                                            >  1:46404821‑M2/1‑59 (MQ=255)
        cGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgcagg                                                            >  1:39990379‑M2/1‑59 (MQ=255)
        cGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgcagg                                                            >  1:2674517‑M2/1‑59 (MQ=255)
        cGGCAATGTGAGCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgcagg                                                            >  1:31798170‑M2/1‑59 (MQ=255)
         ggCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGa                                                           <  1:29627807/68‑1 (MQ=255)
         ggCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGa                                                           <  1:18958059/68‑1 (MQ=255)
          gCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAg                                                          >  1:3725387/1‑68 (MQ=255)
          gCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTCACTCGCCTCGCGCAGGAg                                                          >  1:19899187/1‑68 (MQ=255)
           cAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAg                                                          <  1:4113756/67‑1 (MQ=255)
           cAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAg                                                          <  1:40910754/67‑1 (MQ=255)
                 gATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGaaa                                                   >  1:1488572/1‑68 (MQ=255)
                 gATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGaa                                                    <  1:179251/67‑1 (MQ=255)
                  aTCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGaaa                                                   >  1:12089240/1‑67 (MQ=255)
                     ggCGCCATCGTAGCCGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATccc                                               >  1:38818591/1‑68 (MQ=255)
                      gCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCtcgcgcaggtattcagcaaagaa                                              <  1:8447189‑M2/68‑24 (MQ=255)
                      gCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATccc                                               >  1:13434279/1‑67 (MQ=255)
                          cctcgTAGAAGCGCAGTAGAAAGAGAACTCTCTGACTCGCCTCGCGCAGGAGTAAGAAATCCCGCTgg                                          >  1:47124443‑M2/3‑66 (MQ=255)
                          cATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTgg                                          >  1:4048449‑M2/1‑66 (MQ=255)
                          cATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTgg                                          >  1:10730468‑M2/1‑66 (MQ=255)
                          cATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTgg                                          >  1:27680840‑M2/1‑66 (MQ=255)
                          cATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTgg                                          >  1:46019873‑M2/1‑66 (MQ=255)
                          cATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTgg                                          >  1:537928‑M2/1‑66 (MQ=255)
                          cATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTgg                                          >  1:34854508‑M2/1‑66 (MQ=255)
                          cATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTgg                                          >  1:32568226‑M2/1‑66 (MQ=255)
                           aTCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTggc                                         >  1:21907508‑M2/1‑65 (MQ=255)
                           aTCCTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTggc                                         >  1:22680121‑M2/1‑65 (MQ=255)
                                aGACGCGCAGTACAAAGCTAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGa                                    <  1:23883298/68‑1 (MQ=255)
                                 gACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGa                                    >  1:42108445/1‑67 (MQ=255)
                                 gACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGa                                    >  1:36906701/1‑67 (MQ=255)
                                 gACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGa                                    >  1:10531381/1‑67 (MQ=255)
                                 gACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGa                                    >  1:16919667/1‑67 (MQ=255)
                                  aCGCGCAGTACAAAGCGAAAACTCTGACGCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGAcc                                  >  1:49600552/1‑68 (MQ=255)
                                   cgcgCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATGCCGCTGGCGCAGACCg                                 >  1:50908801/1‑68 (MQ=255)
                                   cgcgCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGAcc                                  <  1:13009695/67‑1 (MQ=255)
                                   cgcgCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGAcc                                  <  1:7944697/67‑1 (MQ=255)
                                   cgcgCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGAcc                                  <  1:20417820/67‑1 (MQ=255)
                                   cgcgCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGAcc                                  <  1:45653530/67‑1 (MQ=255)
                                   cgcgCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCg                                 >  1:2128668/1‑68 (MQ=255)
                                   cgcgCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCCGGCGCAGAcc                                  <  1:50558951/67‑1 (MQ=255)
                                        aGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcg                            >  1:19271933/1‑68 (MQ=255)
                                           aCAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgatt                         >  1:3585898/1‑68 (MQ=255)
                                           aCAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCACGCGCAGACCGtggcgatt                         >  1:4438809/1‑68 (MQ=255)
                                            cAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattg                        >  1:43642729/1‑68 (MQ=255)
                                              aaGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggc                      <  1:33404896/68‑1 (MQ=255)
                                                gCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    >  1:26420783/1‑68 (MQ=255)
                                                gCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    >  1:11224399/1‑68 (MQ=255)
                                                gCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    >  1:7575299/1‑68 (MQ=255)
                                                gCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    >  1:6904493/1‑68 (MQ=255)
                                                gCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    >  1:570369/1‑68 (MQ=255)
                                                gCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    >  1:14280674/1‑68 (MQ=255)
                                                gCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    >  1:4989726/1‑68 (MQ=255)
                                                gCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    >  1:48747315/1‑68 (MQ=255)
                                                gCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    >  1:28105497/1‑68 (MQ=255)
                                                gCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    >  1:2092054/1‑68 (MQ=255)
                                                gCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    >  1:27280889/1‑68 (MQ=255)
                                                gCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    >  1:25585465/1‑68 (MQ=255)
                                                  gAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGtggcgattggcga                    <  1:41747107/66‑1 (MQ=255)
                                                      aCTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGc              <  1:28699227/68‑1 (MQ=255)
                                                      aCTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGc              <  1:45101381/68‑1 (MQ=255)
                                                      aCTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGc              <  1:38375215/68‑1 (MQ=255)
                                                      aCTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGc              <  1:33920208/68‑1 (MQ=255)
                                                      aCTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGc              <  1:26115069/68‑1 (MQ=255)
                                                      aCTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGc              <  1:31309151/68‑1 (MQ=255)
                                                      aCTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGc              <  1:48270276/68‑1 (MQ=255)
                                                      aCTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGc              <  1:42294018/68‑1 (MQ=255)
                                                      aCTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGc              <  1:13983174/68‑1 (MQ=255)
                                                      aCTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGc              <  1:35479096/68‑1 (MQ=255)
                                                       ctctGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGcc             <  1:24364563/68‑1 (MQ=255)
                                                       ctctGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGcc             <  1:1586670/68‑1 (MQ=255)
                                                       ctctGACTCGCATCGGGCAGGAGTATGAAATCCCGGTGGCGCAGACCGTGGCGATTGGCGATGGAGcc             <  1:41486666/68‑1 (MQ=255)
                                                       ctctCACTCGCCTCGCGCAGGAGTATGAAAGCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGcc             <  1:39611721/68‑1 (MQ=255)
                                                                  ctcgcGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGCCAATGACCTGcc  <  1:36223128/68‑1 (MQ=255)
                                                                  ctcgcGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGCCAATGACCTGcc  >  1:36670773/1‑68 (MQ=255)
                                                                  ctcgcGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGCCAATGACCTGcc  <  1:16297771/68‑1 (MQ=255)
                                                                  ctcgcGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGCCAATGACCTGcc  >  1:37621743/1‑68 (MQ=255)
                                                                  ctcgcGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGCCAATGACCTGcc  <  1:8968199/68‑1 (MQ=255)
                                                                  ctcgcGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGCCAATGACCTGcc  <  1:22241273/68‑1 (MQ=255)
                                                                  ctcgcGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGCCAATGACCTGc   <  1:29332113/67‑1 (MQ=255)
                                                                  ctcgcGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGCCAATGACCTGc   <  1:32283868/67‑1 (MQ=255)
                                                                  ctcgcGCAGGAGTATGAAATCCCCCTGGCGCAGACCGTGGCGATTGGCGATTGAGCCAATGACCTGcc  >  1:17438898/1‑68 (MQ=255)
                                                                  |                                                                   
AAATTTACCGGCAATGTGATCGGCGACATCGTAGACGCGCAGTACAAAGCGAAAACTCTGACTCGCCTCGCGCAGGAGTATGAAATCCCGCTGGCGCAGACCGTGGCGATTGGCGATGGAGCCAATGACCTGCC  >  CP009273/4615411‑4615544

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.