| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1209039 = | 561 (0.910) | 43 (0.080) | 15/92 | NT | 9.1% | coding (477/732 nt) | bluR | repressor of blue light‑responsive genes |
| ? | CP009273 | 1209089 = | 397 (0.780) | coding (427/732 nt) | bluR | repressor of blue light‑responsive genes | |||||
Only 100 of 933 total aligned reads displayed.
GCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTAA > CP009273/1209022‑1209156 | tatgagcagtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTc < 1:25613910‑M1/51‑1 (MQ=255)gCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTc > 1:31305109/1‑68 (MQ=255)gCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTc > 1:305997/1‑68 (MQ=255) atgagcagtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCa < 1:39807369‑M2/2‑1 (MQ=255) atgagcagtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCa < 1:39157758‑M2/2‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaa > 1:44172812/1‑68 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaa > 1:22388301/1‑68 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCaa > 1:17826134/1‑68 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:34618997/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:4733748/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:22861117/67‑1 (MQ=255) ttcttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:49505422/67‑1 (MQ=255) ttcatTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCa < 1:10068329/67‑1 (MQ=255) cttTACCGGGGTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAAc < 1:22105278/68‑1 (MQ=255) cttTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAAc < 1:36658093/68‑1 (MQ=255) ttACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt > 1:32451073/1‑68 (MQ=255) agtatgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACAt < 1:1144523‑M2/7‑1 (MQ=255) agtatgtttgACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACAt < 1:40070055‑M1/57‑1 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:23339119/1‑67 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:21295805/1‑67 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:50763506/1‑67 (MQ=255) cGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACt > 1:37544335/1‑67 (MQ=255) tgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGc < 1:15465488‑M2/12‑1 (MQ=255) tgtttgacggcgcattaattgaatacgcagcaacctcgcttttcgaaatgcgccgtCAAACATACTGc < 1:10556448‑M2/12‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:41451497/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:19026479/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:35178107/68‑1 (MQ=255) gggCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:41023446/68‑1 (MQ=255) gggCTTACGGCGAATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGc < 1:8982521/68‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:7026752/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:42850331/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:14545337/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:16072155/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:44405955/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCt < 1:45618494/67‑1 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:5706507/1‑68 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:21576/1‑68 (MQ=255) gCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTc > 1:13064046/1‑68 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:43485784/68‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa < 1:25958223/68‑1 (MQ=255) tACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATa > 1:11899906/1‑68 (MQ=255) ACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATaa < 1:7636741‑M1/68‑1 (MQ=255) CGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt > 1:29161164‑M1/1‑68 (MQ=255) CGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt > 1:19531769‑M1/1‑68 (MQ=255) ggggcATTTCGAAAAGCGAGGTTGCTGCTTATTCAATTAATGCGCCGTCAAACATACTGGTCATAATg < 1:48101155/65‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:30174919‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:45441687‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:33405277‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAAt < 1:35753606‑M1/67‑1 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:32101942‑M1/1‑68 (MQ=255) GGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATg > 1:37128419‑M1/1‑68 (MQ=255) GCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCg > 1:24578987‑M1/1‑67 (MQ=255) ATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGa > 1:14326360‑M1/1‑68 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:45047463/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:6257486/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:18207799/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:38883371/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:37901831/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:24994847/68‑1 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt > 1:26996595/1‑68 (MQ=255) tCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgt < 1:3104421/68‑1 (MQ=255) cGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtg < 1:23739365/68‑1 (MQ=255) cGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtg < 1:19834374/68‑1 (MQ=255) cGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtg < 1:16939344/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:10999948/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt < 1:43883661/68‑1 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGgtgt > 1:3843384/1‑68 (MQ=255) gAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCAGGAGgtgt < 1:28692788/68‑1 (MQ=255) aaaGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGtgttg > 1:16712139/1‑68 (MQ=255) gAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGa < 1:4618480/66‑1 (MQ=255) ttGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCaa < 1:4215441/66‑1 (MQ=255) tgcGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACga > 1:35574808/1‑68 (MQ=255) gTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGAc < 1:943326/68‑1 (MQ=255) ttCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGAc > 1:31816454/1‑65 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTg > 1:13894906/1‑67 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTg > 1:33869630/1‑67 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTg > 1:47817610/1‑67 (MQ=255) cAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTg > 1:12375880/1‑67 (MQ=255) ttAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGa > 1:32952079/1‑68 (MQ=255) ttAATGCGCCGTCAAACATACTGCTCATAAGGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGa < 1:3632173/68‑1 (MQ=255) tAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGa > 1:29889834/1‑67 (MQ=255) atgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACa < 1:14940276‑M2/59‑1 (MQ=255) atgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACa < 1:50211385‑M2/59‑1 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:27408928‑M2/9‑68 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:40268800‑M2/9‑68 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:5288902‑M2/9‑68 (MQ=255) tgcgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAg > 1:13438242‑M2/9‑68 (MQ=255) cgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGa > 1:51225076‑M2/7‑68 (MQ=255) cgccgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGa > 1:48687686‑M2/7‑68 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:17177951‑M2/65‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:1837374‑M2/65‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:47009121‑M2/65‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAg < 1:8351101‑M2/64‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAg < 1:10332310‑M2/64‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAg < 1:2065762‑M2/64‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAg < 1:2412253‑M2/64‑1 (MQ=255) cgtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAg < 1:2638976‑M2/64‑1 (MQ=255) cgtCAAACATACTGCTAATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAgg < 1:20056633‑M2/65‑1 (MQ=255) gtCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGt < 1:27971013‑M2/66‑1 (MQ=255) cAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTaa < 1:46631358/68‑1 (MQ=255) | GCTTCTTTACCGGGCTTACGGCGCATTTCGAAAAGCGAGGTTGCTGCGTATTCAATTAATGCGCCGTCAAACATACTGCTCATAATGCGGGAGGTGTTGTGATCAAGCACGAGACGCTGGCGAACAGGAAGGTAA > CP009273/1209022‑1209156 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |