| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1505831 = | 423 (0.680) | 42 (0.080) | 17/94 | NT | 10.7% | intergenic (+165/‑80) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog |
| ? | CP009273 | 1505880 = | 344 (0.660) | intergenic (+214/‑31) | ydcR/ydcS | putative DNA‑binding transcriptional regulator/putative amino transferase/polyhydroxybutyrate (PHB) synthase, ABC transporter periplasmic binding protein homolog | |||||
Only 100 of 671 total aligned reads displayed.
GGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCGC > CP009273/1505813‑1505947 | tgtcgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTg < 1:25635897‑M1/50‑1 (MQ=255) cGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGa < 1:14650615/67‑1 (MQ=255) gAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAAc < 1:452323/68‑1 (MQ=255) gAAGGTGTGCCGGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAAc < 1:33273667/68‑1 (MQ=255) cgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAAc < 1:35197579‑M1/53‑1 (MQ=255) cgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAAc < 1:4761570‑M1/53‑1 (MQ=255) cgtaattaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAAc < 1:13192883‑M1/53‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACa < 1:22864994/67‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACa < 1:15116263/67‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACa < 1:45866996/67‑1 (MQ=255) aGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAAC‑AGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:50685234/1‑68 (MQ=255) ggTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaat > 1:39732815/1‑68 (MQ=255) gtgtGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatt > 1:8267982/1‑68 (MQ=255) attaattgttcagccgccgtgccgtaaaaatatctccttgtttaaccatagacggcggctGAACaatt < 1:4676743‑M2/8‑1 (MQ=255) ttaattgttcAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaatta < 1:15732674‑M1/58‑1 (MQ=255) gtgCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaa < 1:40298454/68‑1 (MQ=255) gagCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaa < 1:25274291/66‑1 (MQ=255) gCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaatt > 1:35424637/1‑68 (MQ=255) ccTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACaattaatt > 1:948871/1‑67 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTAc > 1:37536907/1‑68 (MQ=255) cTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATA‑TTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:26915253/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:39456223/68‑1 (MQ=255) tGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACg < 1:21746990/68‑1 (MQ=255) gttccgccgccgtgccgtaaaaatatctccttgattaaccatcgccggcggctGAACAATTAATTACg < 1:17853128‑M2/15‑1 (MQ=255) gttcagccgccgtgccgtaaaaatatctccttgtttaaccatagccggcggctGAACAATTAATTACg < 1:20795390‑M2/15‑1 (MQ=255) gttcagccgccgtgccgtaaaaatatctccttgtttaaccatagacggcggctGAACAATTAATTACg < 1:50915922‑M2/15‑1 (MQ=255) cAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGAc > 1:38509996/1‑68 (MQ=255) cAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGAc > 1:6336919/1‑68 (MQ=255) AGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAg < 1:16449823‑M1/68‑1 (MQ=255) cgccgtgccgtaaaaatatctccttgtttaaccatagacggcggctGAACAATTAATTACGACAGGa < 1:43629187‑M2/21‑1 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACTGCGGCTGAACAATTAATTACGACAGGa > 1:8648893‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:42215040‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:28379322‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:42771890‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:22479319‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:41128394‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:24741618‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:43159625‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:22218976‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:46537213‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:11999035‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGa > 1:7344123‑M1/1‑67 (MQ=255) CGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAg > 1:44507966‑M1/1‑68 (MQ=255) GCCGTCTATGGTTAAACAAGTAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGt > 1:28907535‑M1/1‑68 (MQ=255) gccgtaaaaatatctccttgtttaaccatagacggcggctGAACAATTAATTACGACAGGAGTAAGa < 1:48884975‑M2/27‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGa < 1:5276456/67‑1 (MQ=255) cTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAc < 1:45623614/68‑1 (MQ=255) tATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAcc < 1:12397953/68‑1 (MQ=255) cgtaaaaatatctccttgtttaaccatagacggcggctGAACAATTAATTACGACAGGAGTAAGACCt < 1:6909669‑M2/30‑1 (MQ=255) cgtaaaaatatctccttgattaaccatagacgccggctGAACAATTAATTACGACAGGAGTAAGACCt < 1:31740374‑M2/30‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:10532799/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:18060883/68‑1 (MQ=255) aTGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCt < 1:23716716/68‑1 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGAGCTTAt > 1:47886361/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:34921625/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:10201883/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:13563783/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:49733393/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:20518604/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:24436097/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:27496978/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:40644597/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:38234991/1‑68 (MQ=255) gTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAt > 1:36093246/1‑68 (MQ=255) tAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:11403497/68‑1 (MQ=255) tAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:32358293/68‑1 (MQ=255) tAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGa < 1:18536766/68‑1 (MQ=255) aaaCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAg < 1:48661628/68‑1 (MQ=255) aCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCa > 1:34408705/1‑68 (MQ=255) aCAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCa > 1:5675473/1‑68 (MQ=255) tctccttgtttaaccatccccggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAg < 1:12884381‑M2/40‑1 (MQ=255) aaGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAg > 1:8947736/1‑68 (MQ=255) aaGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAg > 1:44145859/1‑68 (MQ=255) gagaTATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACa > 1:7922189/1‑68 (MQ=255) agaTATTTTTACGTCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGAc < 1:36720318/66‑1 (MQ=255) atTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTg > 1:11032977/1‑67 (MQ=255) atTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGc < 1:1890303/68‑1 (MQ=255) tttttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGc > 1:29623127/1‑67 (MQ=255) tttttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGc > 1:48061410/1‑67 (MQ=255) ttttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGccc > 1:30649394/1‑68 (MQ=255) ttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgc > 1:37902629/1‑68 (MQ=255) ttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgc > 1:31034431/1‑68 (MQ=255) ttACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgc < 1:29241313/68‑1 (MQ=255) tACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgca > 1:22681756/1‑68 (MQ=255) ggcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCgcagcc > 1:20247830/1‑67 (MQ=255) gcacggcGGCTGAACAATTAATTACGACAGGAGTAAGACCTTAAGAGCAAGACATTTGCCCgaagca > 1:38944049/1‑67 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:21092032‑M2/58‑1 (MQ=255) acggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCagcagc < 1:25998092‑M2/58‑1 (MQ=255) cggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCt < 1:19532565‑M2/60‑1 (MQ=255) ggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtg < 1:17547835‑M2/61‑1 (MQ=255) ggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtg < 1:31282721‑M2/61‑1 (MQ=255) ggcggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtg < 1:14107909‑M2/61‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTGTGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:50082225‑M2/63‑1 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtgt > 1:47194613‑M2/5‑68 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtgt > 1:30147486‑M2/5‑68 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtgt > 1:19845601‑M2/5‑68 (MQ=255) ggctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtg < 1:16028093‑M2/63‑1 (MQ=255) gctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtgt > 1:3649447‑M2/4‑67 (MQ=255) ctGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCtgtgtg < 1:41754244‑M2/65‑1 (MQ=255) tGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTgc < 1:3360398‑M2/66‑1 (MQ=255) | GGCGAAGGTGTGCCTGCAAGCCGCCGTCTATGGTTAAACAAGGAGATATTTTTACGGCACGGCGGCTGAACAATTAATTACGACAGGAGTAAGACCTTATGAGCAAGACATTTGCCCGCAGCAGCCTGTGTGCGC > CP009273/1505813‑1505947 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |