| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1823129 | 306 (0.490) | 17 (0.030) | 9/94 | NT | 6.1% | coding (863/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase |
| ? | CP009273 | = 1823150 | 265 (0.510) | coding (842/1479 nt) | astD | succinylglutamic semialdehyde dehydrogenase | |||||
Only 100 of 545 total aligned reads displayed.
TGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTC > CP009273/1823084‑1823217 | tggctgACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAAcggc < 1:12956356/67‑1 (MQ=255) ggCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgg > 1:40327702‑M2/1‑66 (MQ=255) cTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCggg > 1:19208736‑M2/1‑64 (MQ=255) tGACGGCAACCAGACTAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc > 1:41961598‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg > 1:40952460‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg > 1:38841463‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg > 1:4794316‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcg > 1:16037858‑M2/1‑63 (MQ=255) tGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggc > 1:5235210‑M2/1‑63 (MQ=255) ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg < 1:11312070‑M2/68‑10 (MQ=255) ggCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagg > 1:17610330‑M2/1‑59 (MQ=255) cAACCAGACGCGCAAGAAACGCAGCGCCCTGCGCCCCGCTTATCAGCAATAAACGGCgggcgcaggg > 1:3649446‑M2/1‑57 (MQ=255) cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcaggg > 1:24718206‑M2/1‑57 (MQ=255) cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt < 1:39530916/67‑1 (MQ=255) cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt < 1:41589955/67‑1 (MQ=255) cAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGt < 1:8038577/67‑1 (MQ=255) aaCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGc < 1:23982035/68‑1 (MQ=255) aaCCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGc < 1:4364040/68‑1 (MQ=255) ccAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAg < 1:29487519/68‑1 (MQ=255) ccAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAg < 1:12524590/68‑1 (MQ=255) ccAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAg < 1:22212861/68‑1 (MQ=255) cAGACGAGCAATAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc < 1:10731700/68‑1 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCTCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc < 1:4994942/68‑1 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc < 1:27567364/68‑1 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc < 1:28103304/68‑1 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc < 1:22469557/68‑1 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc < 1:18209323/68‑1 (MQ=255) cAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGc < 1:17126752/68‑1 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCgggcgcagggcgatgcgtt > 1:16324867‑M2/1‑49 (MQ=255) cGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTg > 1:31823587/1‑68 (MQ=255) aaGAACCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCgg < 1:32459512/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAACCGGCGGGGGCAGGTGCAGCGTTGACCGGc < 1:30674335/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAACCGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:37793017/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:45767259/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:8944545/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:4725620/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:15332625/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:50251492/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:19855595/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:26636411/68‑1 (MQ=255) aGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGc < 1:2049768/68‑1 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCtgt > 1:13237016/1‑68 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt > 1:42894592/1‑68 (MQ=255) aaCGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgt < 1:35672646/68‑1 (MQ=255) cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCtgtg > 1:28769253/1‑67 (MQ=255) cGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGa < 1:40701636/68‑1 (MQ=255) gCATCGCCCTGCGCCCCGCTGTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGAc > 1:1549917/1‑68 (MQ=255) aTCGCCCTGCGCCCCGCTTTTCAGCAATAAACAGCCGGCGCAGGTGCAGCGTTGACCGGCTGTGACaa > 1:49216241/1‑68 (MQ=255) cGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAAc > 1:18902/1‑68 (MQ=255) gCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAAc > 1:44418956/1‑67 (MQ=255) gCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg < 1:25078589/68‑1 (MQ=255) cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg > 1:35831767/1‑67 (MQ=255) cccTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACg > 1:26102654/1‑67 (MQ=255) aCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGGGACAAACg < 1:11850278‑M1/66‑1 (MQ=255) CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAacggc < 1:23153719‑M1/68‑3 (MQ=255) CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc < 1:50432571‑M1/68‑1 (MQ=255) CCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGcc > 1:7812459‑M1/1‑68 (MQ=255) CTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg > 1:34775553‑M1/1‑68 (MQ=255) CTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg > 1:5967251‑M1/1‑68 (MQ=255) TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg < 1:29187534‑M1/67‑1 (MQ=255) TGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg < 1:10120016‑M1/67‑1 (MQ=255) GCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCg < 1:31490675‑M1/66‑1 (MQ=255) gccccgcgGTTCAGCAATAACCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:33215702‑M1/60‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGCCCGGCGGTGACACTCgccgcct < 1:16780206‑M1/67‑4 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAACCGCCGACTg < 1:14990770‑M1/68‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCgacgg < 1:9715297‑M1/68‑3 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:3928611‑M1/68‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:924478‑M1/68‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:35208258‑M1/68‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:23572356‑M1/68‑1 (MQ=255) GCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTg < 1:46410979‑M1/68‑1 (MQ=255) gccccgcTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGCCAAACGCCGCCTGa < 1:3836125‑M1/61‑1 (MQ=255) CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa < 1:25294747‑M1/68‑1 (MQ=255) CCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa < 1:45969213‑M1/68‑1 (MQ=255) CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGaa < 1:398339‑M1/68‑1 (MQ=255) CCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGa > 1:11176656‑M1/1‑67 (MQ=255) gCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATgg < 1:51021126/68‑1 (MQ=255) ttttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGt < 1:33964844/67‑1 (MQ=255) tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa < 1:18470024/68‑1 (MQ=255) tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa < 1:14520715/68‑1 (MQ=255) tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa < 1:44075661/68‑1 (MQ=255) tttCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCa < 1:40072955/68‑1 (MQ=255) tCAGCAATAAACGGCgggcgcagggcgatgcgtttcttgctcgtctggttgccgtcagccagcgatta < 1:48780785‑M2/68‑54 (MQ=255) tCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGa > 1:27288696/1‑68 (MQ=255) tCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGa > 1:45053465/1‑68 (MQ=255) cAGCAATAAACGGCGGGCGCAGGTGCAGTGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt < 1:21611972/68‑1 (MQ=255) cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt < 1:49524983/68‑1 (MQ=255) cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt < 1:21002696/68‑1 (MQ=255) cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt < 1:2991321/68‑1 (MQ=255) cAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGAt < 1:7209394/68‑1 (MQ=255) aaaCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGc < 1:10361836/68‑1 (MQ=255) aaaCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGc < 1:37329358/68‑1 (MQ=255) aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc > 1:6887633/1‑67 (MQ=255) aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc > 1:31033903/1‑67 (MQ=255) aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc > 1:8699524/1‑67 (MQ=255) aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc > 1:42440139/1‑67 (MQ=255) aCGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGcc > 1:48502211/1‑67 (MQ=255) cggcggGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgc > 1:47679036/1‑68 (MQ=255) cggcggGCGCACGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgc > 1:1406006/1‑68 (MQ=255) ggcgggcgCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCcgcg < 1:19605447/68‑1 (MQ=255) | TGGCTGACGGCAACCAGACGAGCAAGAAACGCATCGCCCTGCGCCCCGCTTTTCAGCAATAAACGGCGGGCGCAGGTGCAGCGTTGACCGGCTGTGACAAACGCCGACTGAATGGTCAGATGGACAGCCGCGTC > CP009273/1823084‑1823217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |