| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2145164 | NA (NA) | 5 (0.010) | 5/90 | NT | NA | noncoding (10/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2145172 | NA (NA) | noncoding (18/28 nt) | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 603 total aligned reads displayed.
TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACG > CP009273/2145105‑2145239 | aaGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCt > 1:25760282‑M2/1‑67 (MQ=255) agCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttca < 1:34114844‑M2/68‑5 (MQ=255) gCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttc > 1:3619993‑M2/1‑63 (MQ=255) cAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaa < 1:31100598‑M2/67‑6 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:28463806‑M2/1‑59 (MQ=255) aaTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgc > 1:151025‑M2/1‑59 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc < 1:1010444‑M2/68‑11 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc > 1:44603921‑M2/1‑58 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc < 1:5037732‑M2/68‑11 (MQ=255) aTTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcc < 1:21997489‑M2/68‑11 (MQ=255) ttAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcca < 1:7217903‑M2/68‑12 (MQ=255) ttAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgcca < 1:7841678‑M2/68‑12 (MQ=255) ttCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATgag > 1:28922195/1‑68 (MQ=255) ttCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATgag > 1:19068732/1‑68 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATgaga < 1:27006355/68‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:45069451/66‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATga < 1:45614318/66‑1 (MQ=255) tCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTAGTCTTCAACCGCCATgaga < 1:6139273/68‑1 (MQ=255) gCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaaa < 1:1382451/68‑1 (MQ=255) gCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaaa < 1:26297773/68‑1 (MQ=255) gCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGaaa < 1:11108436/68‑1 (MQ=255) aTCAGCCGTTATATTTATTGTTTAAAGTGGCGGTGGAATTGTTGTCTTCAACCGCCATGAGAAactca < 1:32915000/68‑1 (MQ=255) aTCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactca < 1:27499281/68‑1 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcac < 1:32314331/68‑1 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactc > 1:19271485/1‑66 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactc > 1:49233628/1‑66 (MQ=255) tCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactc > 1:40896265/1‑66 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTg < 1:7358708/67‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTg > 1:50806866/1‑67 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTg > 1:16361259/1‑67 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGc < 1:48641581/68‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGc < 1:21402658/68‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGc < 1:47313750/68‑1 (MQ=255) cGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGc < 1:15565160/68‑1 (MQ=255) gTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGcc < 1:12534670/68‑1 (MQ=255) tataTTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGccc < 1:19568324/67‑1 (MQ=255) tataTTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAAACTCCATGAGAAACTCACTCTGCCca < 1:41271860/68‑1 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGc < 1:47596653/63‑1 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:31831469/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:14397652/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:11979269/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:13356634/1‑68 (MQ=255) tatttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca < 1:9599551/68‑1 (MQ=255) atttattGTTTAAACTGGCGGTTGAATTGTTGTCttcaaccgccagtttaaacaataaatataacggc > 1:30047759‑M2/1‑34 (MQ=255) atttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:30553073/1‑67 (MQ=255) atttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:20704979/1‑67 (MQ=255) atttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:3340407/1‑67 (MQ=255) atttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCcaca > 1:24426515/1‑67 (MQ=255) tttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc < 1:671131/68‑1 (MQ=255) tttattGTTTAAACTGGCGGTTGAATTGTTGGCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc < 1:4366726/68‑1 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:9831808/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:49745824/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:20269172/1‑67 (MQ=255) ttattGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAgc > 1:40077159/1‑67 (MQ=255) ttGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCa > 1:17058476/1‑68 (MQ=255) ttGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCa > 1:38021530/1‑68 (MQ=255) ttGTTTAAACTGGCGGTTGAATTGTTGTCTGCAACCGCCATGAGAAACTCACTCTGCCCACAGCGTCa > 1:45343232/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCACCCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:5317184/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:8153235/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:14681206/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:43159294/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:41657922/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg < 1:31393436/68‑1 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:27239373/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:37801170/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:12353604/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:35387961/1‑68 (MQ=255) tGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAg > 1:31988863/1‑68 (MQ=255) gTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGt > 1:10862052/1‑68 (MQ=255) tttAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAactcactc < 1:45992847/51‑1 (MQ=255) ttAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTg < 1:11477345/67‑1 (MQ=255) aaCTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCaa < 1:29629360/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:8608548/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:46846756/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:5206509/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:1035557/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:39495511/68‑1 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg > 1:37206357/1‑68 (MQ=255) cTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACg < 1:34661859/68‑1 (MQ=255) tGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGt < 1:21138734/68‑1 (MQ=255) tGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGt < 1:42184613/68‑1 (MQ=255) tGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGt < 1:23145234/68‑1 (MQ=255) tGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGt < 1:48175041/68‑1 (MQ=255) ggCGGTTGAATTCTTGTCttcaaccgccagtttaaacaataaatataacggctgattagcgaactaat > 1:38981288‑M2/1‑18 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:44059228/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:18014853/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:23938018/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:33624104/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:34449440/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:357840/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:49530193/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:16063027/67‑1 (MQ=255) ttGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTat < 1:4623671/67‑1 (MQ=255) tGAATTGTTGGCttcaaccgccagtttaaaaaataaatataacggctgattagctaactaattttgct > 1:36959807‑M2/1‑12 (MQ=255) aTTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTatcatca < 1:25451911/68‑1 (MQ=255) gttgtCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATcc < 1:13099344/68‑1 (MQ=255) gttgtCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATcc < 1:18410392/68‑1 (MQ=255) tgtCTTCAACCGCCATGAGAAACTCACTCTTCCCACAGCGACAGTCCCAACGTTTTATCATCATcctt > 1:40421860/1‑66 (MQ=255) tgtCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCg < 1:22520246/67‑1 (MQ=255) tgtCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGt > 1:42784992/1‑68 (MQ=255) | TAAGAGCAAAATTAGTTCGCTAATCAGCCGTTATATTTATTGTTTAAACTGGCGGTTGAATTGTTGTCTTCAACCGCCATGAGAAACTCACTCTGCCCACAGCGCCAGTGCCAACGTTTTATCATCATCCGTACG > CP009273/2145105‑2145239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |