| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,302,995 | T→G | 12.4% | intergenic (‑93/‑50) | clsA ← / → yciY | cardiolipin synthase 1/uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,302,995 | 0 | T | G | 12.4% | 2001.8 / 52.3 | 800 | intergenic (‑93/‑50) | clsA/yciY | cardiolipin synthase 1/uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base T (379/303); new base G (2/113); total (383/417) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.01e-32 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 809 total aligned reads displayed.
GTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGTAGAACG > CP009273/1302931‑1303062 | gTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgg > 1:25537442/1‑68 (MQ=255)gTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgg < 1:35050678/68‑1 (MQ=255) tATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggg < 1:28725529/68‑1 (MQ=255) aGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtgg > 1:16910115/1‑68 (MQ=255) aGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtgg > 1:19210602/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:49790569/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:44736735/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:48779337/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:47733689/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:32141503/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:3739963/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:12543560/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:12221939/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:19837070/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:50689898/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg > 1:37704940/1‑68 (MQ=255) gTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGAGAAAAGCACTGGTCAGCGTCgggggtggg > 1:40951529/1‑68 (MQ=255) gTTTACGCATATGGAATCATCTGGCAAATAAAAACGCGGGAAAAGAACTGGTCAGCGTCgggggtggg > 1:10977821/1‑68 (MQ=255) ttAGGCATATGGATTCATCTGGCAAATAAAAAGGCGGGAAAAGCACTGGTCAGCGTCgggggtgggg < 1:29801966/67‑1 (MQ=255) ttAGGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtgggg < 1:18856786/67‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg < 1:12974165/66‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCgggggtggg < 1:44142356/66‑1 (MQ=255) ttACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGGCgggggtggg < 1:11896028/66‑1 (MQ=255) aCGCATATTGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGta < 1:24459834/68‑1 (MQ=255) aCGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGta < 1:34124817/68‑1 (MQ=255) cGCATTTGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCTTCGGGGGGGGGGGtat < 1:50502299/68‑1 (MQ=255) cGCATATGGATTCATCTGTCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGcat < 1:23660551/68‑1 (MQ=255) cGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtat < 1:36002677/68‑1 (MQ=255) cGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtat > 1:51226536/1‑68 (MQ=255) cGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtat < 1:5466894/68‑1 (MQ=255) cGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtat > 1:43657393/1‑68 (MQ=255) cGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtat > 1:13459721/1‑68 (MQ=255) cGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtat < 1:8703881/68‑1 (MQ=255) gCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtata > 1:2334153/1‑68 (MQ=255) gCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtata > 1:6053947/1‑68 (MQ=255) gCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtata > 1:50987102/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGtata > 1:7960802/1‑67 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:26097075/1‑68 (MQ=255) cATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa > 1:31620567/1‑68 (MQ=255) atatTGATTCTTCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATaa < 1:28060626/67‑1 (MQ=255) tGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGa > 1:33517979/1‑67 (MQ=255) tGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGa > 1:39863918/1‑67 (MQ=255) ggATTCATCTGGCAAATAAAAACGCGGGAAAAGCTCTGGTCAGCGTCGGGGGTGGGGGTATAATGAcc < 1:24172758/68‑1 (MQ=255) ggATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGAcc > 1:15015860/1‑68 (MQ=255) ggATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGAcc < 1:22999234/68‑1 (MQ=255) aTTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:15365687/1‑68 (MQ=255) aTTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:14704889/1‑68 (MQ=255) aTTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:41883172/1‑68 (MQ=255) aTTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:7286042/1‑68 (MQ=255) aTTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:34613362/1‑68 (MQ=255) aTTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:22067260/1‑68 (MQ=255) ttCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAtt < 1:9146917/68‑1 (MQ=255) tCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:1641493/1‑66 (MQ=255) tCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCAt > 1:39291995/1‑66 (MQ=255) tCTGGCAAATAAAAACGCGGGAAACGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGt < 1:40143008/68‑1 (MQ=255) tCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGt > 1:11587333/1‑68 (MQ=255) tCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTATGt > 1:32626581/1‑68 (MQ=255) cTGGCAACAAAAAACGCCGGACCCGCACTGGTCCGCGGCGGGGGGGGGCGTATAATGACCATTCTGtt < 1:36473061/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCCGCGTCGGGGGGGGGGGTATAATGACCATTCTGtt < 1:31194473/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGtt > 1:29192462/1‑68 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGGGGGCGTATAATGACCATTCTGtt < 1:21375721/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACTGGGCCGCGGCGGGGGTGGGGGTATAATGACCATTCTGtt < 1:6405947/68‑1 (MQ=255) cTGGCAAATAAAAACGCGGGAAAAGCACGGGGCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGtt < 1:25845073/68‑1 (MQ=255) cTGCCAAATAAAACCGCGGGCAAAGCCCAGGGCAGCGTCGGGGGTGGGCGTATAATGACCATTCTGtt < 1:4735494/68‑1 (MQ=255) aaaTAAAACCGCGGGAAAAGCACTGGTCAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGc < 1:17237860/68‑1 (MQ=255) aaaTAAAAACGCGTGAAAAGCCCTGGGCAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGc < 1:37225865/68‑1 (MQ=255) aaaTAAAAACGCGGTAACAGCACTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGc < 1:37901175/68‑1 (MQ=255) aaaTAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGCTATAATGACCATTCTGTTATTGc < 1:41401725/68‑1 (MQ=255) aaaTAAAAACGCGGGAAAAGCACTGGGCTGCGTCTGGGGTGGGGGTATAATGACCATTCTGTTATTGc < 1:13834999/68‑1 (MQ=255) taaaCGCGGGAAAAGCCCTGGTCTGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:10341450/67‑1 (MQ=38) cacaCGCGGGAAAAGCACTGGCCCGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:6974676/65‑1 (MQ=255) aaacCGCGGGAAAAGGCCTGGTCCGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:19602792/68‑1 (MQ=255) aaacCGCGGCAAAAGCACTGGGCCGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:45742921/68‑1 (MQ=255) aaaaCGCGGTAAAACCCCTGGTCAGCGGGGGGGGGGGGGGAATAATGACCATTCTGTTATTGCATaga < 1:28326879/68‑1 (MQ=255) aaaaCGCGGGAAACGCACTGGCCCGCGGGGGGGGTGGGGCTATAATGACCATTCTGTTATTGCATaga < 1:27416498/68‑1 (MQ=255) aaaaCGCGGGAAAAGCTCTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:17694335/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGTCCGCGTCGGCGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:40414794/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:7672821/68‑1 (MQ=255) aaaaCGCGGGAAAAGCACTGGTCAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:48220506/68‑1 (MQ=255) aaaaCGCGGGAAAACCACTGGTCAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATaga < 1:43393649/68‑1 (MQ=255) aaaaCGCGCTAAAAGCACTGGGCAGCGTCGGGGGGGGGGGGATAATGACCATTCTGTTATTGCATaga < 1:2492036/68‑1 (MQ=255) cgctGGAATAGCACTGGTCCGCGTCGGGGGTGGTGGTATAATGACCATTCTGTTATTGCATAGagtag < 1:6744244/68‑1 (MQ=255) cgcgGGAAAAGCACTGGTCAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGagtag < 1:15994806/68‑1 (MQ=255) gcgGTAAAAGGCCTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGagtagt < 1:20641701/68‑1 (MQ=255) gcgGGAAAAGCACTGGTCAGAGACCGGCGTGCGGGTATAAAGACAATTCTCATAATGCATAGagtagt > 1:10008748/1‑68 (MQ=255) gcccTGGGCAGCGTCGGGGGGGGGGGTATAAAGACCATTCTGTTATTGCATAGAGTAGTTAACATGaa < 1:42701874/65‑1 (MQ=255) aCTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGc > 1:18394213/1‑68 (MQ=255) aCTGGTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGc < 1:46714605/68‑1 (MQ=255) gggcAGCGTGGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGa < 1:48489535/65‑1 (MQ=255) gggcAGCGGCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGa < 1:22342888/65‑1 (MQ=255) ggTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGa < 1:5807275/68‑1 (MQ=255) ggTCAGCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGa < 1:45143097/68‑1 (MQ=255) ggcAGCGGCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGa < 1:30709501/65‑1 (MQ=255) gTCAGCGGCGGGGGCGGGGCTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGa < 1:4623244/67‑1 (MQ=255) tCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt > 1:26605236/1‑68 (MQ=255) tCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt > 1:3046711/1‑68 (MQ=255) ccgCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt < 1:4938942/65‑1 (MQ=255) ccgCGTCGGGGGGGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt < 1:9420113/65‑1 (MQ=255) catcGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGt < 1:25011735/64‑1 (MQ=255) gcggcgGGGGGGGGGGTAGAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGTAGa < 1:38655486/68‑1 (MQ=255) | GTTATGAGTTTACGCATATGGATTCATCTGGCAAATAAAAACGCGGGAAAAGCACTGGTCAGCGTCGGGGGTGGGGGTATAATGACCATTCTGTTATTGCATAGAGTAGTTAACATGAAGCGGAGTAGAACG > CP009273/1302931‑1303062 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |