| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,460,839 | T→G | 5.8% | pseudogene (1191/2513 nt) | ydbA → | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,460,839 | 0 | T | G | 5.8% | 2103.5 / 12.1 | 776 | pseudogene (1191/2513 nt) | ydbA | pseudogene, autotransporter homolog; interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base T (406/273); new base G (49/6); total (494/282) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.83e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 895 total aligned reads displayed.
ACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACG > CP009273/1460772‑1460906 | aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgtt > 1:24831239/1‑68 (MQ=255)aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgtt > 1:48984377/1‑68 (MQ=255)aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgtt > 1:47993151/1‑68 (MQ=255)aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgtt > 1:50291399/1‑68 (MQ=255)aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgtt > 1:22157615/1‑68 (MQ=255)aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgtt > 1:26778088/1‑68 (MQ=255)aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgtt > 1:26355104/1‑68 (MQ=255)aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgtt > 1:38307577/1‑68 (MQ=255)aCAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgtt > 1:43348492/1‑68 (MQ=255) aaGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCggtggt > 1:11304328/1‑68 (MQ=255) aaGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgttgt < 1:36841136/68‑1 (MQ=255) aaGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgttgt < 1:8867780/68‑1 (MQ=255) aaGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgttgt < 1:6021951/68‑1 (MQ=255) aaGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgtagt > 1:18671362/1‑68 (MQ=255) aaGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGCTTGACGGCGACCAGGCGgtagt > 1:24184560/1‑68 (MQ=255) cACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTaaca > 1:41027057/1‑68 (MQ=255) aCCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGGTTGACGGAGACCAGGCGGTTGTTaaca > 1:38001068/1‑67 (MQ=17) aCCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTGaaca > 1:16823932/1‑67 (MQ=255) aCCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTAGTGaaca > 1:845345/1‑67 (MQ=255) ccATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTaacaac < 1:44324344/68‑1 (MQ=255) ccATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTaacaac < 1:7041316/68‑1 (MQ=255) aTGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGa < 1:51143928/68‑1 (MQ=255) aTGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGa > 1:15363425/1‑68 (MQ=255) tGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGaa > 1:23502324/1‑68 (MQ=255) aCCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTGGTAAAAAACGAAg > 1:17272256/1‑67 (MQ=14) aCCGTCAACGATAAGGAGTCAATCGGGATCCAGGTTTACGGCGACCAGGCGGTTGTTAACAACGAAg > 1:2955520/1‑67 (MQ=18) ccGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGgtt > 1:45448856/1‑53 (MQ=255) ccGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAgg < 1:28311026/67‑1 (MQ=255) ccGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAgg < 1:29833956/67‑1 (MQ=255) cGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGGGACCAGGCGGTTGTTaaaaa > 1:40474889/1‑60 (MQ=17) cGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCg > 1:20934275/1‑68 (MQ=255) cGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTGAAGAACGAAGGCg > 1:49883865/1‑68 (MQ=255) cGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCGTTGTGAACAACGAAGGCg > 1:27757706/1‑68 (MQ=255) cACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCgaga < 1:47150275/68‑1 (MQ=255) aCCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCgaga > 1:34916035/1‑67 (MQ=255) aCCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCgaga > 1:18444612/1‑67 (MQ=255) aCCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCgaga > 1:30804179/1‑67 (MQ=255) aCCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTGAACAACGAAGGCgaga > 1:14815476/1‑67 (MQ=255) aCCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCGTAGTTAAAAACGAAGGCgaga > 1:19859346/1‑67 (MQ=14) aCCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCCCTGGTAAACAACGAAGGCgaga > 1:15991511/1‑67 (MQ=11) aCCGATCCGGAGTCCATCGGTATCCAGCTTGACGGCGACCAGGCCGTTGTGAAGAACGAAGGCgagc > 1:31947106/1‑66 (MQ=11) aCCGATCCGGAGTCCATCGGTATCCAGCTTGACGGCGACCAGGCCGTTGTGAAGAACGAAGGCgaga > 1:39582590/1‑67 (MQ=11) cGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAgcg < 1:22628491/68‑1 (MQ=255) cGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAgcg < 1:34447729/68‑1 (MQ=255) cGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAgc > 1:42051582/1‑67 (MQ=255) gATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAgcgc < 1:45927129/68‑1 (MQ=255) gATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAgcgc < 1:46881459/68‑1 (MQ=255) tCCGGAGTCCATCGGTATCCAGGTTGACGGCGCCCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCa > 1:34005546/1‑68 (MQ=255) ccGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCAt < 1:5431233/68‑1 (MQ=255) ccGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCAt < 1:11622687/68‑1 (MQ=255) ccGGAGTCCATCGGTATCCAGCTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCAt < 1:36419807/68‑1 (MQ=255) ggAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATc > 1:41800550/1‑67 (MQ=255) ggAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCa < 1:23050219/68‑1 (MQ=255) ggAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCa < 1:46509536/68‑1 (MQ=255) ggAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCa < 1:28917163/68‑1 (MQ=255) ggAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTAGTGAAGAACGAAGGCGAGAGCCCAATc > 1:19100251/1‑67 (MQ=14) aGTCCCTCGGTATCCAGTTTGACGGCGACCAGGCTGGTGTTAACAACTAAGGCGAGAGCGCCATCAc < 1:32293976/67‑1 (MQ=18) aGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCAcc > 1:49460908/1‑68 (MQ=255) aGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCAcc > 1:12567974/1‑68 (MQ=255) aGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCAc < 1:42802606/67‑1 (MQ=255) gTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCa > 1:12980223/1‑68 (MQ=255) gTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAAAAACGAAGGCGAGAGCGCCATCACCa > 1:38675850/1‑68 (MQ=255) ccATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCaa < 1:12081578/67‑1 (MQ=255) cATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACg < 1:48580541/68‑1 (MQ=255) cATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACg < 1:29187447/68‑1 (MQ=255) aTCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACgg < 1:39824305/68‑1 (MQ=255) cGGTATCCAGCTGGACGGGGACCAGGCGGTGGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTg < 1:803128/68‑1 (MQ=18) ggTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTg > 1:6290089/1‑67 (MQ=255) ggTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAAAggag > 1:35264962/1‑65 (MQ=255) ggTATCCAGGTTGACGGCGACCAGGCCGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACggag > 1:33575031/1‑65 (MQ=255) ccAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCg > 1:44685406/1‑68 (MQ=255) ccAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGGGGCACCg > 1:43636144/1‑68 (MQ=255) ccAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCAATCACCAAAGGTGGCACCg > 1:10004912/1‑68 (MQ=255) ccAGGTTGACGGCGACCAGGCGGTAGTTAAGAACGAAGGCGAGAGCGCAATCACCAAAGGCGGCACCg > 1:10326623/1‑68 (MQ=17) ggTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCGATCACCAAAGGGGGCACCGGc > 1:1365209/1‑67 (MQ=21) ggTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGc > 1:17708334/1‑67 (MQ=255) ggTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGc > 1:6709351/1‑67 (MQ=255) ggTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAAAGGAGGCACCGGc > 1:20415028/1‑67 (MQ=255) ggTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCACTATCACCAATGGCGGCa > 1:33187208/1‑62 (MQ=14) ttGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCAc < 1:47549555/67‑1 (MQ=255) ttGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCAc > 1:14320378/1‑67 (MQ=255) ttGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCAc > 1:25303703/1‑67 (MQ=255) ttGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCAc > 1:50556770/1‑67 (MQ=255) ttGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCAc > 1:18212089/1‑67 (MQ=255) gACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAAAGGTGGCACCGGCACGCa > 1:21845592/1‑68 (MQ=255) cGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAg < 1:30285646/67‑1 (MQ=255) cGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGa < 1:9583967/68‑1 (MQ=255) cGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGa < 1:39211842/68‑1 (MQ=255) cGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGa < 1:9276701/68‑1 (MQ=255) cGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGa < 1:10862608/68‑1 (MQ=255) cGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGa < 1:1944261/68‑1 (MQ=255) cGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGa < 1:21367590/68‑1 (MQ=255) cGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGa < 1:2737909/68‑1 (MQ=255) cGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGa < 1:32770656/68‑1 (MQ=255) gACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTaa < 1:3728966/68‑1 (MQ=255) aaGGCGTTTGTTAATAACGAAGGCGAGAGCGGCATCACCAACGGTGGCACCGGCACGCAGATTAACgg < 1:37665283/67‑1 (MQ=17) cGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGtgat > 1:3592132/1‑68 (MQ=255) cGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGAGGCACCGGCACTCCGATAAACGGtgaa > 1:7626180/1‑67 (MQ=18) cGGTTGTTAACAACGAAGGCGAGAGCGCCATCACAAACGGTGGCACCGGAACGCAGATTAACGGtgat > 1:25959419/1‑68 (MQ=255) tgttAACAACGAAGGCGAGAGCTCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACg < 1:31536768/68‑1 (MQ=255) | ACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACGCAGATTAACGGTGATGACG > CP009273/1460772‑1460906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |