| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,062 | T→A | 15.7% | R629R (CGT→CGA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,062 | 0 | T | A | 15.7% | 908.9 / 42.8 | 551 | R629R (CGT→CGA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base T (187/236); new base A (58/13); total (277/274) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.70e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 566 total aligned reads displayed.
GCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGC > CP009273/1702997‑1703126 | gCTAATGCGGAACCAGAAGAACAGGTCGATCCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt > 1:7920748/1‑67 (MQ=255) cTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:27434949/65‑1 (MQ=35) cTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGt < 1:49363850/65‑1 (MQ=35) cTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCAGTAGCCGCCGCTATTGCCCGAGcg > 1:17550498/1‑67 (MQ=11) aaTGCGGAACCAGAAGAACAGGGCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCaa < 1:34320321/68‑1 (MQ=25) gCGGAACCAGAAGAACAGGTCTAT‑AAGCGCAAAGACGCCGTCGAAGCCGCAATTCCCCGAGCCAAAg > 1:25267546/1‑67 (MQ=11) gCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCGGCTATTGCCCGAGCCAAAGc > 1:23930929/1‑68 (MQ=255) gCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGc > 1:24960197/1‑68 (MQ=35) gCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGc > 1:4397553/1‑68 (MQ=35) gCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTAGCCGCGGCTATTGCCCGAGCGAAAg > 1:454932/1‑67 (MQ=11) gCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTAGCAGCCGCTATTGCCCGTGCCCAAGc > 1:35637614/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTAGAAGCGGCTATTGCCCGAGCaaagg > 1:20980069/1‑65 (MQ=11) gCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTAGAAGCGGCTATTGCCCGAGCAAAAGc > 1:6852424/1‑68 (MQ=11) gCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCAGTCGCAGCCGCTATTGCCCGTGCaaagg > 1:24546916/1‑65 (MQ=11) gCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCAGTCGACGCCGCTATTGCCCGAGCCaacg > 1:43269939/1‑65 (MQ=11) cGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTAGCAGCGGCTATTGCCCGAGCAAAAGc > 1:27668134/1‑67 (MQ=11) cGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGCGCGAAAGCa > 1:41180727/1‑68 (MQ=11) aCCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCa > 1:14380960/1‑68 (MQ=40) cAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:1850551/68‑1 (MQ=40) cAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAg < 1:36743952/68‑1 (MQ=40) aagaaCAGGTCGAT‑CCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGTGCGAAAGCAAGAAAGCTg > 1:32001932/1‑68 (MQ=14) agaaCAGGTCGAT‑CCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGAGCGAAGGCAAGCAAGCTg > 1:2708256/1‑67 (MQ=14) taaCATGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa < 1:3402156/67‑1 (MQ=255) caaCAGGCCGAT‑CCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGa < 1:22336880/67‑1 (MQ=11) aaCAGGTCGAT‑CCGCGCAAAGCAGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGa > 1:49942779/1‑67 (MQ=11) aaCAGGGCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGaa < 1:28220648/68‑1 (MQ=25) aaCAGGGCGAT‑CCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGaa < 1:10370249/68‑1 (MQ=11) aCAGGTCGAT‑CCGCGCAAAGCCGCCGTGGAAGCGGCTATTGCCCGAGCCAAAGCACGCAAGCTGGCAc > 1:37650415/1‑68 (MQ=11) aCAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCACGCTGGa < 1:32234010/66‑1 (MQ=25) aCAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCACGCAAGCTGGAAc > 1:38649950/1‑68 (MQ=25) tgTCGAT‑CCGCGAAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGc < 1:15346451/67‑1 (MQ=11) tCGAT‑CCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGTGCCAACGCACGCAAGCGGGAACAGCa > 1:18077995/1‑67 (MQ=11) tCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACa < 1:38202789/64‑1 (MQ=35) tCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:13378884/1‑67 (MQ=35) tCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa < 1:5830981/67‑1 (MQ=35) tCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:5072659/1‑67 (MQ=35) tCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:49089103/1‑67 (MQ=35) tCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCa > 1:9049950/1‑67 (MQ=35) gcGAT‑CCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGc < 1:12445924/65‑1 (MQ=255) gcGAT‑CCTCGAAAATCCGCCGTTGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGc < 1:6300707/65‑1 (MQ=11) aT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:25587319/1‑68 (MQ=35) t‑CCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:5339295/68‑1 (MQ=25) t‑CCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:31103096/68‑1 (MQ=25) t‑CCTCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:26611390/68‑1 (MQ=255) t‑CCGCGGAAATCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:7276358/68‑1 (MQ=255) t‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:19871979/68‑1 (MQ=35) t‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:34788839/68‑1 (MQ=35) t‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:11301254/68‑1 (MQ=35) t‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:11025267/68‑1 (MQ=35) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:26178142/1‑66 (MQ=35) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:16991512/1‑66 (MQ=35) cgcAAATCCGCCGTCGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTaa < 1:48061858/68‑1 (MQ=255) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:7589036/1‑68 (MQ=35) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAAt > 1:32996049/1‑68 (MQ=35) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGGGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTaa < 1:27947807/67‑1 (MQ=25) aaaCCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATg < 1:43607637/67‑1 (MQ=25) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:35203704/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:40431639/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:12651893/1‑68 (MQ=40) gccgccGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGa > 1:30972340/1‑68 (MQ=40) cgccgTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAg < 1:28996069/67‑1 (MQ=255) gccgTCGAAGCAGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGcc < 1:31673914/68‑1 (MQ=255) cgTCGAAGCGGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAg > 1:46875269/1‑68 (MQ=255) cgTCGAAGCCGCTATTGCCCGTGCCAAAGCCCGCAAGCGGGAACAGCAACAGGCTAATGCCGAGCCAg > 1:22933608/1‑68 (MQ=14) ctaaGACGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:15036132/66‑1 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:29963514/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:34512896/68‑1 (MQ=255) cGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:28548690/68‑1 (MQ=255) cGAAGCAGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaac < 1:41947982/68‑1 (MQ=255) gAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaaca < 1:20349968/68‑1 (MQ=255) agcagcTATGGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGaacaac < 1:15700780/68‑1 (MQ=14) ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCACCAGGCTAATGCCGTGCCAGAACAACAg > 1:32610949/1‑68 (MQ=255) ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg > 1:39088277/1‑68 (MQ=255) ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg > 1:40878785/1‑68 (MQ=255) ccGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg > 1:11949732/1‑68 (MQ=255) agCTATTGCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg < 1:16270051/66‑1 (MQ=255) agCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAg < 1:8273436/66‑1 (MQ=255) gCTATCGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGt < 1:19257229/68‑1 (MQ=255) atagCCCGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGa < 1:45248453/65‑1 (MQ=255) tGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGCACACCAGGTCgct > 1:9401925/1‑65 (MQ=14) tGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGAt > 1:464710/1‑67 (MQ=255) tGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGAt > 1:42166650/1‑67 (MQ=255) gCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTGGATcc > 1:22647535/1‑68 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTCGATcc > 1:18652882/1‑67 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATcc > 1:37177864/1‑67 (MQ=255) cccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATcc > 1:363672/1‑67 (MQ=255) ccGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACTGGTCGATCcgc < 1:45935044/68‑1 (MQ=255) ccGTGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc < 1:48528817/68‑1 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGAGCCAGAACAACAGGTGGATCcgc > 1:37920016/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGTGCCAGAACAACAGGTCGATCcgc > 1:29491986/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc > 1:21543081/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc > 1:51039412/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc > 1:30462453/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc > 1:47498650/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc > 1:10051712/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCcgc > 1:40112789/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCcgc > 1:14541005/1‑68 (MQ=255) ccGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCGTATGCCGAGCCAGAAAAACAGGTCGATCcgc > 1:44636640/1‑68 (MQ=14) ccGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc < 1:44239450/68‑1 (MQ=255) ccGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCcgc < 1:33704361/68‑1 (MQ=255) | GCTAATGCGGAACCAGAAGAACAGGTCGAT‑CCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGC > CP009273/1702997‑1703126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |