| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,132 | G→C | 5.4% | A653P (GCC→CCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,132 | 0 | G | C | 5.4% | 1547.9 / 10.0 | 526 | A653P (GCC→CCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base G (352/129); new base C (2/30); total (354/172) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.91e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 571 total aligned reads displayed.
AAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGA > CP009273/1703066‑1703199 | aGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAAGAACAGGTAGATCCGCGCAAAgcc > 1:34896760/1‑67 (MQ=255) aGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAgcc > 1:8697969/1‑67 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTGGATCCGCGCAAAgccg > 1:37313426/1‑67 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAgcggc > 1:25317956/1‑68 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAgccg > 1:6374348/1‑67 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAgccg > 1:7287473/1‑67 (MQ=255) gCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAgccgc > 1:21368052/1‑68 (MQ=255) aGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCgca > 1:5757364/1‑66 (MQ=255) tGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 1:28142774/66‑1 (MQ=40) tGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 1:35346311/66‑1 (MQ=40) gAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTCGAAGcc > 1:27183528/1‑66 (MQ=255) aaCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:41011424/67‑1 (MQ=40) aaCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:4292872/67‑1 (MQ=40) aaCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:43503468/67‑1 (MQ=40) aaCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCt > 1:31588347/1‑68 (MQ=255) aaCAGCAACAGGCTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:13306933/67‑1 (MQ=25) aaCAGCAACAGGCTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:40485706/67‑1 (MQ=25) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTCGAAGCCGCTa > 1:14900138/1‑68 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCTAAGCCGCt < 1:3140578/67‑1 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTa > 1:18140309/1‑68 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:7002898/67‑1 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:3246001/67‑1 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:9141598/67‑1 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTa > 1:39125557/1‑68 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGCCGCCGCTa > 1:44028717/1‑68 (MQ=14) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCGGCTa > 1:17766612/1‑68 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCAGCCGTCGACGCCGCTa > 1:15563848/1‑68 (MQ=14) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGc > 1:15083220/1‑67 (MQ=255) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc > 1:22834324/1‑67 (MQ=40) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc > 1:36705132/1‑67 (MQ=40) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc > 1:27814040/1‑67 (MQ=40) aaCAGGCTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc < 1:44373534/67‑1 (MQ=25) aCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGccc > 1:28830968/1‑68 (MQ=40) aCAGGCTAATGCCGAGCCAGAACAACAGGTAGATCCGCTCAAAGCGGCCGTCGAAGCCGCTATTGccc > 1:17268964/1‑68 (MQ=14) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCgcg > 1:24718090/1‑65 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCgcg > 1:5050053/1‑65 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCgcg > 1:13651908/1‑65 (MQ=14) gCTAATGCCGAGCCAGAACAACAGGTAGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGac > 1:45004013/1‑66 (MQ=14) atAATTCCGACCCAGAACAAGTGGTTGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:38277577/64‑1 (MQ=11) atAATTCCGACCCAGAACAACAGGTCGATCCGCGAAAATCCGCCGTCGAAGCCGCTATTGCCCGAg < 1:49520545/65‑1 (MQ=14) atAATCCCGAGCCAGAACACGAGGTAGATCCGCGGAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:20591634/64‑1 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAACGCCGCCGTCGCAGCCGCTATTGCCCGCGCCAACgc > 1:34258867/1‑68 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGACGCGGCTATTGCCCGCGCAAAGgc > 1:8449568/1‑68 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc > 1:25874700/1‑56 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgc > 1:47058455/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAACgc > 1:18890111/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:5979061/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:43043360/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:26678128/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:22175231/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:46357786/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:47856608/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:10639747/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAgc > 1:36374194/1‑68 (MQ=255) cGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAACgcgc > 1:30746794/1‑68 (MQ=255) cGACCCAGAACAACAGGGCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgc < 1:51107956/68‑1 (MQ=11) aaccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgcga > 1:19434653/3‑67 (MQ=14) ccAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaa > 1:48314389/1‑68 (MQ=35) cAGAAGAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa < 1:232111/66‑1 (MQ=25) cAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:2431302/68‑1 (MQ=37) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:28324090/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACggg > 1:12048577/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACggg > 1:14421724/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:44754250/1‑68 (MQ=255) caacaGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAAAGCACGCAAACGGGa > 1:49837221/1‑68 (MQ=11) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGa > 1:7701375/1‑67 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa > 1:23818936/1‑67 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa > 1:42151287/1‑67 (MQ=255) acaGGTCGATCCGCGCAAAGCCGCCGTAGAAGCGGCTATTGCACGAGCCAACGCCCGCAAGCGGGacc > 1:3784443/1‑66 (MQ=11) acaGGTCGATCCGCGCAAAGCCGCAGTAGCAGCCGCTATTGCCCGAGCCAAGGCCCGAAAGCGGGAAc > 1:45289089/1‑68 (MQ=11) caGGTCGATCCGCGCAAAGCCTCAGTCGTATACGCTTATCCCCGAGCCCGAGCCCGCTAGCGGGatcc > 1:29791749/1‑65 (MQ=2) caGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGGCAAAGCGCGCAAACGGGAACa > 1:47344399/1‑68 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAATCGGGAACa > 1:3030760/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCAAAAGCGCGCAAACGGGAACa > 1:33431430/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAACGCGCGCAAACGGGAACa > 1:29417459/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa > 1:12450079/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGACCAAACGCGAACa > 1:10325884/1‑67 (MQ=14) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCACGAGCCAAAGCCCGCAACCGGGAACAGCa > 1:45943602/1‑68 (MQ=14) tccaTCCGCGCAAAGCAGCCGTCGAAGCGGCTATTGCCCGAGCCAAAGCGCACAACCGGGAACAGCa > 1:8266168/4‑67 (MQ=14) tagATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGc < 1:19865507/64‑1 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCa > 1:10942605/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAACGCCCGCAAGCGGGAACAGCa > 1:38697104/1‑67 (MQ=11) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGc < 1:33907552/66‑1 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:3298740/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAAGCGGGCACAGCa > 1:16152260/1‑67 (MQ=11) ccGATCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGc < 1:22582380/65‑1 (MQ=255) ggATCCTCGTAAACCCGCCGTCGAAGCAGCTATAGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAAc < 1:5443936/67‑1 (MQ=14) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAAcc > 1:13955741/1‑68 (MQ=255) tCCTCGTAAACCTGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:11684734/68‑1 (MQ=17) tCCTCGAAAATCTGCCGTGGAAGCCGCTATAGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:34639950/68‑1 (MQ=14) tCCTCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:20902987/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCg > 1:39765488/1‑67 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAATCGGGAACAGCAACCgg < 1:9595991/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg > 1:32122572/1‑67 (MQ=255) tCCCCGTAAATCCGCCGTTGAAGCAGCTATAGCCCGAGCCAATGCGCGCAAACGGGAACAGCAACCgg < 1:41463139/68‑1 (MQ=14) tCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:45589390/68‑1 (MQ=255) tCCACGTAAACCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:16802615/68‑1 (MQ=17) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGACCAGCAACCg > 1:4870077/1‑66 (MQ=255) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCt > 1:36039369/1‑68 (MQ=255) cgcAAATCAGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:12913760/64‑1 (MQ=17) | AAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGA > CP009273/1703066‑1703199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |