| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,140 | C→A | 7.8% | V655V (GTC→GTA) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,140 | 0 | C | A | 7.8% | 1333.8 / 9.4 | 580 | V655V (GTC→GTA) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base C (312/189); new base A (55/4); total (370/210) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.46e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 591 total aligned reads displayed.
GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAG > CP009273/1703073‑1703207 | gCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGaa > 1:3278824/1‑67 (MQ=40) tGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 1:41253992/66‑1 (MQ=40) tGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAg < 1:35346311/66‑1 (MQ=40) tGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc > 1:8942350/1‑68 (MQ=40) tGGAACAGCAACAGGCTAATCCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc < 1:32375098/68‑1 (MQ=255) gAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGcc > 1:26254635/1‑66 (MQ=40) aaCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGc < 1:16969870/67‑1 (MQ=40) agaGCATCAGGCTAATGCCGAGGCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:973182/65‑1 (MQ=14) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTAGACGCGGCTa > 1:12302687/1‑68 (MQ=14) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCAGTCGAAGCCGCTa > 1:14900138/1‑68 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:44551395/67‑1 (MQ=40) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGCAGCCGCTa > 1:2691294/1‑68 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGACGCCGCTa > 1:43449926/1‑68 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTa > 1:8112889/1‑68 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGACGCTa > 1:36957142/1‑68 (MQ=255) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGCCGCGGCTa > 1:33643655/1‑68 (MQ=14) aCAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGACGCGGCTa > 1:29667393/1‑68 (MQ=14) aCAGCAACAGGCTAATGCCGACCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCt < 1:22773241/67‑1 (MQ=25) cAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTAt > 1:31502298/1‑68 (MQ=255) tcAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTg < 1:1673932/67‑1 (MQ=255) aaCAGGCTAATGCCGAGCCAGAACCACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc < 1:7057980/67‑1 (MQ=255) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGc > 1:15083220/1‑67 (MQ=255) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc > 1:36705132/1‑67 (MQ=40) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGc > 1:45938779/1‑67 (MQ=40) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGc > 1:43028547/1‑67 (MQ=255) aaCAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTGGAAGCCGCTATTGc > 1:19142893/1‑67 (MQ=255) gCTAATGCCGTGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCgcg > 1:39639529/1‑65 (MQ=14) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCgcg > 1:23150012/1‑65 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCgcg > 1:27701253/1‑65 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCgcg > 1:24718090/1‑65 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCGGCTATTGCCCGAGc > 1:468545/1‑68 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCgcg > 1:8394388/1‑65 (MQ=255) cTAATCACGACCCAGAACAACATGTGGATCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:3126244/65‑1 (MQ=11) atAATTCCGACCCAGAACAACAGGTCGATCCGCGAAAATCCGCCGTCGAAGCCGCTATTGCCCGAg < 1:49520545/65‑1 (MQ=14) atAATCCCGACCCAGAAAACGAGGCCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGc < 1:42839534/66‑1 (MQ=14) gCCGAGCCAGAACAACAGGTCTATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCaatg > 1:442595/1‑65 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAAAg > 1:44994788/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgc > 1:51294715/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgc > 1:3317100/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgc > 1:12619799/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:28539105/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:17480741/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:10880851/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:46357786/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:6471549/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:5979061/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTAGAAGCCGCTATTGCCCGCGCCAAAgc > 1:48193264/1‑68 (MQ=14) aGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGAGCAAAAgcgagc > 1:29316936/1‑68 (MQ=14) accAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGCAGCCGCTATTGCCCGAGCCAAAgcgcgc > 1:40835963/2‑67 (MQ=11) aGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:47321302/67‑1 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACggg > 1:50423830/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:11781795/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:18121510/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACg < 1:28029857/66‑1 (MQ=40) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCCCGCAAACggg > 1:5722037/1‑68 (MQ=255) caacaGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGCGCCAAAGCACGCAAACGGGa > 1:49837221/1‑68 (MQ=11) caacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCAAAAGCCCGCAAACggg > 1:20778407/1‑67 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa > 1:9413271/1‑67 (MQ=255) acaGGTCGATCCGCGCAAAGCCGCAGTAGCAGCCGCTATTGCCCGAGCCAAGGCCCGAAAGCGGGAAc > 1:45289089/1‑68 (MQ=11) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGAAAACGCGAACa > 1:42064126/1‑67 (MQ=14) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa > 1:10387377/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa > 1:24055153/1‑67 (MQ=255) tgTCGATCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGc < 1:24508924/67‑1 (MQ=14) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCGGGAACAGCa > 1:37802348/1‑68 (MQ=25) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:40004942/1‑68 (MQ=255) tCGATCCGCGCTTAGCCGCGTGCTAAGCCGCTAATTCCCGAGCCAAAGCGCGCAAACGGGAACAGCa < 1:30489373/67‑1 (MQ=14) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGTGCCAAAGCGCTCAAACGGGAACAGCa > 1:21655310/1‑67 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCAGCAAACGCGAACAGCa > 1:38277119/1‑67 (MQ=14) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:38990821/1‑67 (MQ=255) cGATCCCCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAAc < 1:13602311/68‑1 (MQ=14) tCCTCGTAAAGCAGCCGTGGAAGCCGCTATTGCACGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:38461169/68‑1 (MQ=17) tCCGCGCAAAGCCGCCGTCGCAGCCGCTATTGCCCGAGCCAAAGCCCGCAAACGGGAACAGCAAACg > 1:28215822/1‑67 (MQ=14) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAATCGGGAACAGCa > 1:7490889/1‑63 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:15469844/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:34805200/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg > 1:25229619/1‑67 (MQ=255) tCCGCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:43915594/68‑1 (MQ=255) tCCCCGTAAACCTGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg < 1:137980/67‑1 (MQ=14) tCCCCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:47776940/68‑1 (MQ=255) tCCCCGCAAACCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:45589390/68‑1 (MQ=255) tCCCCGCAAACCAGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:11078849/68‑1 (MQ=17) acagcgtAAATCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:25802957/65‑1 (MQ=17) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGACCAGCAACCg > 1:4870077/1‑66 (MQ=255) ccGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg > 1:18704925/1‑66 (MQ=255) cgcgCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCt > 1:36039369/1‑68 (MQ=255) ggaaaCCCGCCGTCGAAGCCGCTATCGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt < 1:34493757/66‑1 (MQ=14) cAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt > 1:20508557/1‑67 (MQ=255) gccgccGTCGAAGCCGCTATTGCGGTAGCCAAAGCGCGAAACCGGGAACAGCAACCGGCTAATGCGGa > 1:22256892/1‑68 (MQ=14) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa > 1:2125320/1‑68 (MQ=255) cgccgTCGAAGCCGCTATTGCCCTTGCCAAAGCTCGCAACCGGGAACAGCAACCGGCTAATGCGGAGc < 1:14312828/68‑1 (MQ=14) cgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGGTGATGCGGCAACAGCAACCGGCTAATGCGGAGc < 1:19735180/68‑1 (MQ=14) cgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGc < 1:34019760/68‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:15757154/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:1316844/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:23736947/67‑1 (MQ=255) cgTCGAAGCAGCTATTGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:31920062/67‑1 (MQ=255) cGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaa < 1:30084878/67‑1 (MQ=255) cGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag < 1:10052621/68‑1 (MQ=255) cGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaa < 1:5112206/67‑1 (MQ=255) cGAAGCAGCTATCGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag < 1:36380362/68‑1 (MQ=255) | GCAAGCTGGAACAGCAACAGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAG > CP009273/1703073‑1703207 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |