| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,158 | A→C | 14.1% | R661R (CGA→CGC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,158 | 0 | A | C | 14.1% | 982.6 / 51.8 | 563 | R661R (CGA→CGC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base A (275/194); new base C (61/26); total (337/226) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.57e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 583 total aligned reads displayed.
AGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCA > CP009273/1703091‑1703225 | aGGCTAATGCCGATCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:36146266/68‑1 (MQ=255) gCTAATGCCGAGCCAGAACTACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCgcgc > 1:1061963/1‑68 (MQ=255) gCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg > 1:5576482/1‑67 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGcc > 1:11539837/1‑68 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg < 1:28483841/66‑1 (MQ=255) cTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg < 1:30269870/66‑1 (MQ=255) cTAATGCCGAGCCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAg < 1:23741104/66‑1 (MQ=255) cTAATGACGAGCCAGAACAACAGGGCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGa < 1:19205641/65‑1 (MQ=255) atAATTCCGAGCCAGAACAAGAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGc < 1:23394124/66‑1 (MQ=14) atAATTCCGACCCAGAACAACAGGTCGATCCGCGAAAATCCGCCGTCGAAGCCGCTATTGCCCGAg < 1:49520545/65‑1 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCGGCCGTCGACGCGGCTATTGCCCGCGCAAAGgc > 1:8449568/1‑68 (MQ=14) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGACGCCGCTATTGCCCGAGCCAAAg > 1:48420522/1‑67 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgc > 1:22590404/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgc > 1:45958884/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:47856608/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:6352837/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:5979061/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgc > 1:29789444/1‑68 (MQ=255) gCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAg > 1:49797264/1‑67 (MQ=255) ccGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAgc > 1:13240913/1‑67 (MQ=255) cGACCCAGAACAACAGGGCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAgcgc < 1:51107956/68‑1 (MQ=11) aGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCAGTCGAAGCCGCTATTGCCCGAGCAAAAgcgagc > 1:29316936/1‑68 (MQ=14) cccAGAACACCAGGGCGATCCTCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCa < 1:9021086/67‑1 (MQ=11) cAGAAAAACATGCCGATCCTCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCaaa < 1:35127991/68‑1 (MQ=11) aacaacAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAGCgg > 1:22909636/1‑68 (MQ=18) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACggg > 1:12048577/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCGAAAGCCCGCAAGCggg > 1:2688964/1‑68 (MQ=11) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:3955418/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:44754250/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACggg > 1:40039829/1‑68 (MQ=255) acaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACgg > 1:25746213/1‑67 (MQ=255) gaacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCGAAGGCCCGCAAGCGGGa > 1:4574746/2‑68 (MQ=11) caacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa > 1:22287326/1‑68 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCGCGCAAACGGGa > 1:7701375/1‑67 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa > 1:7127589/1‑67 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa > 1:42151287/1‑67 (MQ=255) aacaGGTCGATCCGCGCAAAGCCGCCGTAGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGa > 1:9413271/1‑67 (MQ=255) acaGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAAc > 1:32812179/1‑68 (MQ=255) caGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGGCAAAGCGCGCAAACGGGAACa > 1:47344399/1‑68 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCAAAAGCGCGCAAACGGGAACa > 1:33431430/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAACGCGCGCAAACGGGAACa > 1:28187969/1‑67 (MQ=255) aGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACa > 1:36501900/1‑67 (MQ=255) gtagATCCGCGCAAAGCCGCCGTGGAAGCCGCTATTGCCCGAGCCAAAGCGCGCTAACGGGAACAGCa > 1:49022515/4‑68 (MQ=14) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:4286351/1‑68 (MQ=255) gTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa > 1:27956355/1‑68 (MQ=255) tccaTCCGCGCAAAGCAGCCGTCGAAGCGGCTATTGCCCGAGCCAAAGCGCACAACCGGGAACAGCa > 1:8266168/4‑67 (MQ=14) tCGATCCGCGCTTAGCCGCGTGCTAAGCCGCTAATTCCCGAGCCAAAGCGCGCAAACGGGAACAGCa < 1:30489373/67‑1 (MQ=14) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGCGCCAAAGCCAGCAAACGCGAACAGCa > 1:38277119/1‑67 (MQ=14) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCa < 1:34709815/67‑1 (MQ=255) tCGATCCGCGCAAAGCCGCCGTCGAAGCCGCAATTGCACGAGCCAAAGCGCGCAAGCGGGAACAGCaa > 1:31632984/1‑68 (MQ=11) cGATCCCCGCAAACCCGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAAc < 1:13602311/68‑1 (MQ=14) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAAcc > 1:14918334/1‑68 (MQ=255) gATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAAcc > 1:13955741/1‑68 (MQ=255) tCCTCGTAAAGCAGCCGTGGAAGCCGCTATTGCACGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:38461169/68‑1 (MQ=17) tCCTCGCAAATCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:16740829/68‑1 (MQ=255) tCCTCGCAAACCTGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:43487190/68‑1 (MQ=17) tCCTCGCAAACCCGCCGTCGAAGCCGCTATAGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:1828275/68‑1 (MQ=17) tCCTCGAAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:20902987/68‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg > 1:32122572/1‑67 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg < 1:37692833/67‑1 (MQ=255) tCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCg > 1:25229619/1‑67 (MQ=255) tCCACGGAAATCTGCCGTGGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:20657488/68‑1 (MQ=14) cgcAAATCAGCCGTCGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCgg < 1:12913760/64‑1 (MQ=17) ggaaaCCCGCCGTCGAAGCCGCTATCGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt < 1:34493757/66‑1 (MQ=14) gcAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAAt > 1:45520460/1‑68 (MQ=255) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa > 1:10361165/1‑68 (MQ=255) gccgccGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGa > 1:2125320/1‑68 (MQ=255) ccgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAg < 1:16300550/68‑1 (MQ=255) ccgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAg < 1:26085426/68‑1 (MQ=255) cgccgTCGAAGCCGCTATTGCCCTTGCCAAAGCTCGCAACCGGGAACAGCAACCGGCTAATGCGGAGc < 1:14312828/68‑1 (MQ=14) cgccgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGc < 1:34019760/68‑1 (MQ=255) cgTGGAAGCAGCTATCGCCCGCGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:24735880/67‑1 (MQ=11) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCag > 1:15574263/1‑68 (MQ=255) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCag > 1:24176813/1‑68 (MQ=255) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:51255198/67‑1 (MQ=255) cgTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:50311575/67‑1 (MQ=255) cgTAGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCa < 1:36729177/67‑1 (MQ=255) tCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaa > 1:9593393/1‑68 (MQ=255) ctaaGCCGCTATTGCCCGTGCCAAAGCGCGCATACTTGAACATAAACCGGATAATGCGGAGCCagaag < 1:10985193/66‑1 (MQ=11) cGAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaag < 1:10052621/68‑1 (MQ=255) gAAGCAGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCagaaga < 1:46994164/68‑1 (MQ=255) aGCCGCTATCGCCCGAGCCAAAGCGCGCAACCGGGAACAGCAACCGGCTAATGCGGAGCCAgaagaa < 1:20337289/67‑1 (MQ=255) ccGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg > 1:4065884/1‑68 (MQ=255) cGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:43137081/67‑1 (MQ=255) cGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:38898382/67‑1 (MQ=255) cGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:45068771/67‑1 (MQ=255) cGCTATCGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:31241667/67‑1 (MQ=255) agCTATTGCCCGAGCCAAAGCGCGCAATCGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:24595249/66‑1 (MQ=255) agCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAg < 1:15150746/66‑1 (MQ=255) tGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGAt > 1:19699094/1‑67 (MQ=255) tGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGAt > 1:12382453/1‑67 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc > 1:1882500/1‑67 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc > 1:21717789/1‑67 (MQ=255) cccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATcc > 1:46506353/1‑67 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:20080627/1‑68 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:4423198/1‑68 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:17554027/1‑68 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:17229483/1‑68 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc > 1:35936234/1‑68 (MQ=255) ccGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCcgc < 1:41060070/68‑1 (MQ=255) | AGGCTAATGCCGAGCCAGAACAACAGGTCGATCCGCGCAAAGCCGCCGTCGAAGCCGCTATTGCCCGAGCCAAAGCGCGCAAACGGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCA > CP009273/1703091‑1703225 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |