| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,703,242 | G→C | 7.5% | A689A (GCG→GCC) | rsxC → | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,703,242 | 0 | G | C | 7.5% | 1715.6 / 32.4 | 607 | A689A (GCG→GCC) | rsxC | SoxR iron‑sulfur cluster reduction factor component; putative membrane‑associated NADH oxidoreductase of electron transport complex |
| Reads supporting (aligned to +/- strand): ref base G (211/310); new base C (3/42); total (214/393) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.36e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 653 total aligned reads displayed.
GGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGG > CP009273/1703175‑1703309 | tggAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCg < 1:34619160/67‑1 (MQ=255)tggAACAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTAGATCCGCGCAAAGCTGCCGTCGAAGCg < 1:23015475/67‑1 (MQ=11)tggAACAGCAACAGGCTAATGCGGAGCCAGAACAAGAGGTTGATCCGCTCAAAGCTGCCGTCGAAGCg < 1:18966800/67‑1 (MQ=11)gggAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCg < 1:41888476/68‑1 (MQ=255)gggAACAGCAACCGGCTAATGCGGAGCCAGAACAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCg < 1:10990377/68‑1 (MQ=255) ggAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGGTGATCCGCGCAAAGCTGCCGTCGAAGCgc < 1:48216344/68‑2 (MQ=255) aaCAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGc < 1:5731774/67‑1 (MQ=255) aaCAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGc < 1:37590380/67‑1 (MQ=255) aaCAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGc < 1:47145090/67‑1 (MQ=255) aaCAGCAACCGGCTAATGCGGAGCCAGAACAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGc < 1:46327945/67‑1 (MQ=255) aaCAGCAACCGGCTAATGCGGAGCCAGAACAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGc < 1:42512220/67‑1 (MQ=255) aaCAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCGGc < 1:4022985/67‑1 (MQ=11) aCAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCt < 1:43571626/67‑1 (MQ=255) aCAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTa > 1:3049772/1‑68 (MQ=255) aCAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTa > 1:4405143/1‑68 (MQ=255) aCAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTa > 1:49200822/1‑68 (MQ=255) aCAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTa > 1:36582989/1‑68 (MQ=255) aCAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTa > 1:34046164/1‑68 (MQ=255) aCAGCAACAGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCt < 1:14175701/67‑1 (MQ=255) cAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGc > 1:38748398/1‑68 (MQ=255) aaCCGGCTAATGCGGAGCCAGAAGAACAGGTGGATCCGCGCAAAGCTGCCGTCGAAGCGGCTAt < 1:13263090/64‑1 (MQ=255) ggCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:1956833/68‑1 (MQ=255) ggCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:27104562/68‑1 (MQ=255) gccTAATGCGGAGCCAGAAGAACAGGGTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCAcgcg < 1:29230534/66‑1 (MQ=255) cTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGcc > 1:947646/1‑68 (MQ=255) aTGCGGAGCCAGAAGAACAGGATGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCaaa < 1:21260879/68‑1 (MQ=255) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGCAGCGGCTATTGCACGCGCCAAAGc > 1:27975689/1‑68 (MQ=255) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAg > 1:25276883/1‑67 (MQ=255) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc > 1:21718680/1‑68 (MQ=255) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc > 1:14751660/1‑68 (MQ=255) gCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc > 1:48730336/1‑68 (MQ=255) cGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGc > 1:26065149/1‑67 (MQ=255) cGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTAGAAGCGGCTATTGCACGCGCCAAAGc > 1:6579966/1‑67 (MQ=255) ggAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTTCCGGCGAAGCGGCTATTGCACGCGCCAAAGCa < 1:30941704/67‑1 (MQ=255) ggAGCCAGAAGAACAGGATGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCAc < 1:20945915/68‑1 (MQ=255) aGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACg < 1:10154250/67‑1 (MQ=255) aGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGc > 1:31046670/1‑68 (MQ=255) cagcagACCTGGTTGATCCTCGCAAAGCTGCCGTAGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAg < 1:8745064/68‑1 (MQ=14) cagcagACCATGTTGATCCTCGCAAAGCTGCCGTCGAAGCTGCTATTGCACGCGCCAAAGCACGCAAg < 1:40588791/68‑1 (MQ=17) cAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:12872853/68‑1 (MQ=255) cAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:37188364/68‑1 (MQ=255) cAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:4652317/68‑1 (MQ=255) cAGAAGAACAGGTGGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:11712073/68‑1 (MQ=255) cAGAAGAACAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAg < 1:38075643/68‑1 (MQ=255) aagaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTg > 1:31738362/1‑68 (MQ=255) aagaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTg > 1:18476159/1‑68 (MQ=255) agaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGAAAGCTgg > 1:24412530/1‑68 (MQ=255) accaCATGTTGATCCCCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg < 1:36242025/65‑1 (MQ=18) acaaCAGGTGGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg < 1:45664200/66‑1 (MQ=255) gaaCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTgg > 1:11199710/1‑67 (MQ=255) caaCAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGa < 1:5442459/67‑1 (MQ=255) ccAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGaa < 1:41109977/66‑1 (MQ=255) aCAGGTTGCTCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGa < 1:33349763/66‑1 (MQ=255) aCAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAAc > 1:19989389/1‑68 (MQ=255) aCAGGTCGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGa < 1:15572342/66‑1 (MQ=255) cAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAATGCACGCAAGCTGGAACa > 1:23518734/1‑68 (MQ=255) cAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACa > 1:29629039/1‑68 (MQ=255) aGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACa > 1:45002679/1‑67 (MQ=255) ggctGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGc < 1:50786023/65‑1 (MQ=255) gTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa > 1:4292702/1‑68 (MQ=255) ttGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa > 1:6358523/1‑67 (MQ=255) ttGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa > 1:32676479/1‑67 (MQ=255) tggATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCa < 1:34820372/65‑1 (MQ=255) tCCTCGCAAATCTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:26446313/68‑1 (MQ=14) tCCTCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:22777129/68‑1 (MQ=255) tCCTCGCAAACCTGCCGTCGAAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:35406339/68‑1 (MQ=14) tCCGGGAAATGCTGCTGTGGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:28709821/68‑1 (MQ=17) tCCGCGCAAATCTGCCGTCGAAGCGGCTATTGCCCGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:17379736/68‑1 (MQ=255) tCCGCGCAAAGCTGCCGTCGACGCGGCTATTGCACGCGCCAAAGCACCCAAGCTGGAACAGCAACAgg < 1:16015325/68‑1 (MQ=17) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgt < 1:16674085/68‑2 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:783835/68‑1 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:13787086/68‑1 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:26808532/1‑67 (MQ=255) tCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAg > 1:7194012/1‑67 (MQ=255) tCCGCGCAAAGCAGCCGTCGAAGCGGCTATTTCACGTGCCAAAGCCCGCAAGCTGGAACAGCAACAgg < 1:1756259/68‑1 (MQ=11) tCCGAGCAAGGCGGCCGGCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAgg < 1:22146280/68‑1 (MQ=14) cgcgCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCt < 1:17980137/68‑1 (MQ=255) gcAAAGCTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCCCGCAAGCTGGAACAGCAACAGGCTAAt < 1:27682286/68‑1 (MQ=14) aGCTGCCGTCGAAGCTGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCgg < 1:23899944/68‑1 (MQ=255) gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:27563253/1‑68 (MQ=255) gCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:39617428/1‑68 (MQ=255) cTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGt > 1:43181344/1‑67 (MQ=255) cTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:12141673/68‑1 (MQ=255) cTGCCGTCGAAGCCGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:5110433/68‑1 (MQ=255) cTGCCGTCGAAGCCGCTATAGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:6880464/68‑1 (MQ=255) atGCGGTGGAATCTGCTATTTCACGCTCCAAAGCACGCAAGCTGTAACAGAAACAGTCTAATGCGGTa < 1:25890252/67‑1 (MQ=12) tGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTa < 1:49469882/67‑1 (MQ=255) cGTTGAAGCGGCTATTGCCCGCGGCAAAGCTCTCAATCTGGATCAGCATCAGGCTAATGCGGTACCa < 1:22512057/67‑1 (MQ=11) cGTCGAAGCTGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:20581679/67‑1 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:50298540/67‑1 (MQ=255) cGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:39218656/67‑1 (MQ=255) cGTCGAAGCGGCTATAGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCa < 1:32135786/67‑1 (MQ=255) gTCGAAGCTGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCaga < 1:8410769/68‑1 (MQ=255) cGAAGCGTCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaag < 1:47699179/68‑1 (MQ=255) cGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaa < 1:2488194/67‑1 (MQ=255) agAAGCTGCTATTGCACGCGCCAAAGCTCGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaag < 1:41658047/67‑1 (MQ=14) gAAGCTGCTATGGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCaaaaga < 1:7444976/68‑1 (MQ=17) gAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga < 1:45903826/68‑1 (MQ=255) aaGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCagaaga > 1:3123965/1‑67 (MQ=255) aGCGGCTATTGCACGCGCCAAAGCTCGCAAGCTGGACCAGCAACAGGCTACTGCGGTACCAGAAGAAc > 1:10623170/1‑68 (MQ=17) | GGGAACAGCAACCGGCTAATGCGGAGCCAGAAGAACAGGTTGATCCGCGCAAAGCTGCCGTCGAAGCGGCTATTGCACGCGCCAAAGCACGCAAGCTGGAACAGCAACAGGCTAATGCGGTACCAGAAGAACAGG > CP009273/1703175‑1703309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |