| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,579 | G→T | 20.4% | noncoding (373/377 nt) | rnpB ← | RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,579 | 0 | G | T | 20.4% | 1165.4 / 75.3 | 503 | noncoding (373/377 nt) | rnpB | RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base G (233/148); new base T (58/51); total (297/206) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.51e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 522 total aligned reads displayed.
AGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGG > CP009273/3263512‑3263645 | gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa > 1:14301980/1‑68 (MQ=35) gTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGa > 1:10045288/1‑68 (MQ=35) cattcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGaa < 1:8116993/67‑1 (MQ=35) tcatCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTg > 1:15018547/1‑68 (MQ=35) ggtcagtttcacctgatttacgtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTg < 1:22117732‑M1/44‑1 (MQ=255) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:22890686/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:44584711/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:11285088/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:4408296/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:4273372/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:4001215/1‑67 (MQ=35) atCTTTCTGCCCCTCCAAAAGAAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGa > 1:16229632/1‑67 (MQ=255) tCTTTCTGCCCCTCCAAAAGAAAAAACACGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGAcc > 1:11521633/1‑68 (MQ=255) cTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCg > 1:42001506/1‑68 (MQ=35) tttCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGa > 1:50757582/1‑68 (MQ=35) cTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATaa < 1:24529059/68‑1 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:51085636/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:27434343/1‑67 (MQ=35) gCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAg > 1:44359348/1‑67 (MQ=35) ccccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGcc > 1:42428174/1‑68 (MQ=35) cccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCg > 1:36364337/1‑68 (MQ=35) ccTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCgg < 1:13846896/68‑1 (MQ=37) tcaaaaaTCATAAACCCGCCGTAACGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGt < 1:21135664/65‑1 (MQ=11) tttacgtAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGccggtt < 1:49602583‑M1/59‑3 (MQ=255) cAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt > 1:3002173/1‑66 (MQ=40) cAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGt > 1:22429243/1‑66 (MQ=40) aagtAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt > 1:45991242‑M1/5‑68 (MQ=255) aaGCTAAAACCCGCCGTAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:2724761/68‑1 (MQ=255) aaGCATAAACCCGCCGAATCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:40693868/68‑1 (MQ=17) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:6505337/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:4877736/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:12681483/68‑1 (MQ=255) aaGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGt < 1:8571323/68‑1 (MQ=255) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGCCCGATAAGCCGGGTTCTGTc > 1:7652046/1‑68 (MQ=255) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTc > 1:37818223/1‑68 (MQ=255) aGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTc > 1:1760763/1‑68 (MQ=255) gCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGGGTTCTGttg > 1:15346388/1‑66 (MQ=255) AAAACCCGCCGAATCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTgg > 1:40368177‑M1/1‑68 (MQ=255) AACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGAc < 1:12468223‑M1/68‑1 (MQ=255) ACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa > 1:26009422‑M1/1‑68 (MQ=255) ACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACa > 1:37677721‑M1/1‑68 (MQ=255) CCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAg < 1:41543836‑M1/68‑1 (MQ=255) ccgccgAAGCGGTGTTTTTCGTAATTGAGGTGATACATACGGATAAGCCGGTTTCTGTCGTGGACAGt < 1:46892654/68‑1 (MQ=16) CCGCCGGACCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:34819659‑M1/1‑68 (MQ=255) CCGCCGCAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:19339123‑M1/1‑68 (MQ=255) CCGCCGCAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:31322531‑M1/1‑68 (MQ=255) CCGCCGCACCGGTTTATTACGTACATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:34570101‑M1/1‑68 (MQ=255) CCGCCGAATCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:12126328‑M1/1‑68 (MQ=255) CCGCCGAAGCGGTTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:49035288‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:41094098‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:31769591‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:7147084‑M1/1‑68 (MQ=255) CCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGt > 1:18152676‑M1/1‑68 (MQ=255) CGCCGCAGCGGGTTATTACGTAAAGCCGGGGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:23607856‑M1/1‑68 (MQ=255) CGCCGAAGCGTGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:3563811‑M1/1‑68 (MQ=255) CGCCGAAGCGGTTTATTACGTACATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTCGACAGTc > 1:50118165‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:38146987‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:8278318‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:30358367‑M1/1‑68 (MQ=255) CGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:37009089‑M1/1‑68 (MQ=255) CGCCGAACCGGTTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:33295225‑M1/1‑68 (MQ=255) CGCCGAACCGGTTTATTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTc > 1:16649321‑M1/1‑68 (MQ=255) gccgACTCGTGTTTTTACGTAATTCAGGTGAAACAGACCGATAATGCGGTTTCTGTCGTGGACAGtca < 1:39052866/68‑1 (MQ=18) GCCGCAGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa > 1:35931294‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTTTTTCGTAAATCACGTGAAACTGCCCTATAAGCCGGGTTCTGTCGTGGACAGTCa > 1:15662045‑M1/1‑68 (MQ=255) GCCGAAGCGGGTTATTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCa > 1:10935326‑M1/1‑68 (MQ=255) GCCGAACCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGTGTTCTGTCGTGGACAGTCa > 1:9693196‑M1/1‑68 (MQ=255) atcggttttttACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:24923813‑M2/57‑1 (MQ=255) aGCGTGTTTTTACGTACTTCACGATAATCTGACCTCTAAGCCGGTTTCTGTCGTGGACAGtcattca < 1:21773572/67‑1 (MQ=16) aGCGGGTTTTTAGTTTAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:2149273/68‑1 (MQ=25) aGCGGGTTTTTACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattcat < 1:7952714/68‑1 (MQ=255) aGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattca < 1:42050631/67‑1 (MQ=255) aGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGtcattca < 1:26803865/67‑1 (MQ=255) gtttttACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAg < 1:32468259‑M2/61‑1 (MQ=255) gtttttACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAg > 1:21875226‑M2/7‑67 (MQ=255) ttttttCGTAAATCTGTTTAAATTGAAATATAAGCCGGGTTCTGTCGGGGACAGTCATTCATCTAgg < 1:30818921/67‑1 (MQ=19) tttttACGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGc < 1:45014736‑M2/63‑1 (MQ=255) aCGTAAATCAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa < 1:28325249/68‑1 (MQ=255) aCGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa > 1:39277380/1‑68 (MQ=255) aCGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa > 1:49347109/1‑68 (MQ=255) aCGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa > 1:5867705/1‑68 (MQ=255) aCGTAAATCAGGCGACTCTTACCGATAACGCGTGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCa < 1:34191/68‑1 (MQ=25) cGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCaa > 1:10370724/1‑68 (MQ=255) aaaTCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAAGCCAGCAATc < 1:27651667/67‑1 (MQ=255) aTCAGGTTAAACTGACCGATAATCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCt < 1:20737234/68‑1 (MQ=255) tCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc > 1:9248049/1‑68 (MQ=255) tCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc > 1:13008017/1‑68 (MQ=255) tCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc > 1:16886658/1‑68 (MQ=255) tCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc > 1:48141053/1‑68 (MQ=255) tCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTc > 1:24018724/1‑68 (MQ=255) acAGGTGAAACTGACCGATAAGCCGGTTTCTGTGGTGGAGAGTCTATGGTCTAGGCCAGCAATCGCTc > 1:5153484/2‑68 (MQ=18) ccggTGAAACTTCCCGATTATCCGTGTCCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCa < 1:3738441/66‑1 (MQ=25) cAGGTTAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCa < 1:43542050/68‑1 (MQ=255) tGAAACTGACCGATAAGCCGGTTTCTGTCGTGGACAGTCAATATTCTAGGCAATCAATAGCTCACtc > 1:26293503/1‑66 (MQ=21) tGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTg > 1:20342916/1‑67 (MQ=255) tGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTg > 1:28921694/1‑67 (MQ=255) gAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTgg < 1:26249804/67‑1 (MQ=255) gAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTgg < 1:29523183/67‑1 (MQ=255) gAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTgg < 1:38481233/67‑1 (MQ=255) gAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTgg < 1:45780509/67‑1 (MQ=255) | AGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAATCAGGTGAAACTGACCGATAAGCCGGGTTCTGTCGTGGACAGTCATTCATCTAGGCCAGCAATCGCTCACTGG > CP009273/3263512‑3263645 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |