| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,706,297 | A→C | 5.5% | intergenic (‑3/‑155) | yhjY ← / → tag | autotransporter beta‑domain protein/3‑methyl‑adenine DNA glycosylase I, constitutive |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,706,297 | 0 | A | C | 5.5% | 2424.1 / 23.5 | 914 | intergenic (‑3/‑155) | yhjY/tag | autotransporter beta‑domain protein/3‑methyl‑adenine DNA glycosylase I, constitutive |
| Reads supporting (aligned to +/- strand): ref base A (183/668); new base C (3/60); total (186/728) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.45e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 946 total aligned reads displayed.
CACTGATTACCACGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGT > CP009273/3706231‑3706364 | aCTGATTACCACGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAac > 1:19284702/1‑67 (MQ=255) aCTGATTACCACGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAac > 1:28480952/1‑67 (MQ=255) gATTACCACGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACg > 1:3678133/1‑67 (MQ=255) aTTACCACGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGAc < 1:1646437/68‑1 (MQ=255) ttACCACGCTCGCCAGCAGGCTTAGGTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACt < 1:3550521/68‑1 (MQ=255) ttACCACGCTCGCCAGCAGGCTTAGCTGCCAGCTACCACCGCTTTTTTTTATGATCATTAACACGACt < 1:17607250/68‑1 (MQ=255) ttACCACGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATTATCATTAACACGACt < 1:14398390/68‑1 (MQ=255) ttACCACGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCTTTAACACGACt < 1:22270234/68‑1 (MQ=255) ttACCACGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGAc < 1:6917843/67‑1 (MQ=255) ttACCACGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACt < 1:38348960/68‑1 (MQ=255) ttACCACGCGCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACt < 1:18942401/68‑1 (MQ=255) aCCACGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTcc < 1:9200690/68‑1 (MQ=255) ccACGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCa > 1:28176149/1‑68 (MQ=255) aCGCTCGCCAGCAGGCTTAGCTGCCAGGGACCACCGCTTTTTTTTGTGATCATTAACACGACTCCAgg > 1:47390382/1‑68 (MQ=255) aCGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAgg > 1:11766747/1‑68 (MQ=255) aCGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAgg > 1:33448118/1‑68 (MQ=255) aCGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAgg > 1:11197831/1‑68 (MQ=255) aCGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAgg > 1:20285163/1‑68 (MQ=255) aCGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTAATGATCATTAACACGACGCCAgg > 1:17114710/1‑68 (MQ=255) gCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGCCTCCAGGGa > 1:40420145/1‑68 (MQ=255) gCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGa > 1:30337418/1‑68 (MQ=255) gCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGa > 1:51091764/1‑68 (MQ=255) tCGCCAGCTGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAag < 1:15667257/68‑1 (MQ=255) tCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAag > 1:880962/1‑68 (MQ=255) agGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGa < 1:36100209/66‑1 (MQ=255) agGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAAt > 1:20855176/1‑68 (MQ=255) gCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTACCACGACTCCAGGGAAGAGCCGAATTc > 1:46250166/1‑68 (MQ=255) ttAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTGACACGACTCCAGGGAAGAGCCGAATTCg < 1:31193305/67‑1 (MQ=255) tcgCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGc < 1:2405574/66‑1 (MQ=255) taccTGCCAGGGACCACCGCTTTTTTTTATGATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGc < 1:34599195/65‑1 (MQ=255) cTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAat > 1:40775614/1‑68 (MQ=255) tGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGATTTCGGCAata > 1:48962754/1‑68 (MQ=255) tGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAata < 1:19793225/68‑1 (MQ=255) tGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAata > 1:24532969/1‑68 (MQ=255) tGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAata > 1:32235289/1‑68 (MQ=255) tGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAat < 1:37707319/67‑1 (MQ=255) tGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAat < 1:41596492/67‑1 (MQ=255) tGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAat < 1:7824017/67‑1 (MQ=255) tGCCAGCGACCACCGCTTTTTTTTATGATAATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAat < 1:42002190/67‑1 (MQ=255) tGCCAGCGACCACCGCTTTTTTTTATGACCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAat < 1:43201768/67‑1 (MQ=255) gCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAatat < 1:34062619/68‑1 (MQ=255) gCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAatat < 1:49490072/68‑1 (MQ=255) gCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAatat < 1:27097089/68‑1 (MQ=255) gCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGAATCCAGGGAAGAGCCGAATTCGGCAatat < 1:12716722/68‑1 (MQ=255) gCCAGCGACCACCGCTTTTTTTTATGATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAatat < 1:45352809/68‑1 (MQ=255) ccAGCGACCCCCGCTTTTTTTTATGATCATAACCACGACTCCAGGGAAGAGCCGAATTCGGCAatat < 1:21690564/67‑1 (MQ=255) cAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAAtatt < 1:22580771/67‑1 (MQ=255) gCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATattatt > 1:25075349/1‑68 (MQ=255) gACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATattatt < 1:1002948/66‑1 (MQ=255) gACCACCGCTTTTTTTTATGATCATTAACACGACACCAGGGAAGAGCCGAATTCGGCAATATTATTGt < 1:12347047/68‑1 (MQ=255) accaccGCTTTTTTTTTTTATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTc < 1:6452534/68‑1 (MQ=255) accaccGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTc > 1:13043110/1‑68 (MQ=255) accaccGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTc > 1:39027254/1‑68 (MQ=255) accaccGCTTTTTTTTATGATAATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGt < 1:39460331/67‑1 (MQ=255) caccGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCAt < 1:23527839/68‑1 (MQ=255) accGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCAtt < 1:29545782/68‑1 (MQ=255) ccGCTTTTTTTTATGATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTg < 1:29910650/68‑1 (MQ=255) ggCTTTTTTTTTTGAACTTTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:27393020/67‑1 (MQ=255) ggCTTTTTTTTTTCAACATTACCACGACTCCATGGAAGAGCCGTATTCGGCAATATTATTGTCATTGt < 1:33082211/67‑1 (MQ=255) cGCTTTTTTTTATTATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:42616038/68‑1 (MQ=255) cGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:45017512/68‑1 (MQ=255) cGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:47729659/68‑1 (MQ=255) cGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:48528684/68‑1 (MQ=255) cGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:9465277/68‑1 (MQ=255) cGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:13808048/68‑1 (MQ=255) cGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:1511160/68‑1 (MQ=255) cGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:27747746/68‑1 (MQ=255) cGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:14808542/68‑1 (MQ=255) cGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:26692718/68‑1 (MQ=255) cGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTACTGTCATTGt < 1:48270711/68‑1 (MQ=255) cGCTTTTTTTTATGATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:45727590/68‑1 (MQ=255) cGCTTTTTTTTATGATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGt < 1:31445638/68‑1 (MQ=255) cGCTTTTTTTAATGAGCATTACCACGACTCCAGGGAAGAGCCGAATGCGGCAATATTATTGTCATTGt < 1:39947692/68‑1 (MQ=255) gCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTa > 1:28799951/1‑68 (MQ=255) cTTTTTTTTTTTAATATAAACTGGACTCGAGGGAAGAGCCGAATTCGGCAATATTATTGTCTTTGTa < 1:46641358/67‑1 (MQ=255) cTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTAt > 1:16798046/1‑68 (MQ=255) ttttttttATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTAt < 1:10439752/67‑1 (MQ=255) ttttttttATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTAt < 1:5681138/67‑1 (MQ=255) tttttttATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGa < 1:30759716/68‑1 (MQ=255) ttttATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAgg < 1:43954316/68‑1 (MQ=255) ttttTGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGa < 1:10768279/68‑1 (MQ=255) tttATTATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGa < 1:3514929/68‑1 (MQ=255) ttttGATCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGat < 1:44541381/65‑1 (MQ=255) ttATGATCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGat < 1:18556376/68‑1 (MQ=255) ttATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGat < 1:50555828/68‑1 (MQ=255) ttATGATAATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGat < 1:6039729/68‑1 (MQ=255) aTGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGatat < 1:18074923/68‑1 (MQ=255) aTCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCgg < 1:25728578/68‑1 (MQ=255) aTCATAAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCgg < 1:50202443/68‑1 (MQ=255) tCATTACCACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCgg < 1:8149988/67‑1 (MQ=255) tCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCgg < 1:15885555/67‑1 (MQ=255) tCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCgg < 1:23394639/67‑1 (MQ=255) tCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCgg < 1:3708842/67‑1 (MQ=255) cATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGc < 1:38633372/68‑1 (MQ=255) aTTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCa < 1:26257380/68‑1 (MQ=255) tAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAta < 1:23029998/68‑1 (MQ=255) tAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAta < 1:7531463/68‑1 (MQ=255) tAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAta < 1:26887099/68‑1 (MQ=255) tAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAta < 1:41117368/68‑1 (MQ=255) tAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCAta < 1:32779573/68‑1 (MQ=255) | CACTGATTACCACGCTCGCCAGCAGGCTTAGCTGCCAGCGACCACCGCTTTTTTTTATGATCATTAACACGACTCCAGGGAAGAGCCGAATTCGGCAATATTATTGTCATTGTATGAAGGATATCGGGCATAGT > CP009273/3706231‑3706364 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |