| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 356,924 | C→T | 100% | intergenic (+67/+36) | cynX → / ← lacA | putative cyanate transporter/thiogalactoside acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 356,924 | 0 | C | T | 100.0% | 1827.1 / ‑6.7 | 512 | intergenic (+67/+36) | cynX/lacA | putative cyanate transporter/thiogalactoside acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (200/311); minor base G (0/1); total (200/312) | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
Only 100 of 512 total aligned reads displayed.
GACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTT > CP009273/356861‑356988 | gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:32551895/68‑1 (MQ=255)gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:49283939/68‑1 (MQ=255)gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:11248581/68‑1 (MQ=255)gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:35638592/68‑1 (MQ=255)gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:46880387/68‑1 (MQ=255)gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:39492805/68‑1 (MQ=255)gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:37108901/68‑1 (MQ=255)gACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGa < 1:16582991/68‑1 (MQ=255) gCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATaa > 1:32185783/1‑68 (MQ=255) gCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATaa > 1:18612576/1‑68 (MQ=255) ttGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTTAACTTGTAGGTCTGATAAgc < 1:6497254/68‑1 (MQ=255) gTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAgcgc < 1:48661564/68‑1 (MQ=255) tCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCa < 1:38350044/67‑1 (MQ=255) tCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCa < 1:40616482/67‑1 (MQ=255) tCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCa < 1:14247213/67‑1 (MQ=255) tCCTGCGCTTTGTTCAAGCCGGAAGCGGCTAATGTACATCGCTGAACTTGTAGGTCTGATAAGCGCa < 1:18388838/67‑1 (MQ=38) ccTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGc > 1:23856563/1‑68 (MQ=255) ccTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGc < 1:51201940/68‑1 (MQ=255) ccTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGc < 1:33651152/68‑1 (MQ=255) ccTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGc > 1:42307143/1‑68 (MQ=255) cTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCg < 1:30755067/68‑1 (MQ=255) cTGCGC‑TTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:45716757/68‑1 (MQ=38) tccgcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:7776066/66‑1 (MQ=255) tGCGCTTTGTTCCTGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:50694706/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:39414241/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:44406199/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:1238903/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:28174005/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:2701866/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:26722809/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:19967557/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:25840119/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:23440385/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:37863500/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:19477591/68‑1 (MQ=255) tGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:22116465/68‑1 (MQ=255) tGCGCTTTGTTCATGACGGATGCGGCTCAACTCGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGt < 1:48031071/68‑1 (MQ=25) cgcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTa > 1:34258131/1‑67 (MQ=255) cgcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTa > 1:21945893/1‑67 (MQ=255) gcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTAt < 1:10637650/67‑1 (MQ=255) gcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATc > 1:46073662/1‑68 (MQ=255) gcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATc > 1:3622867/1‑68 (MQ=255) gcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATc > 1:42806881/1‑68 (MQ=255) gcTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATc > 1:37695520/1‑68 (MQ=255) ttGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAgg < 1:7451064/68‑1 (MQ=255) gTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCa > 1:30052258/1‑68 (MQ=255) tCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAAt > 1:35000571/1‑68 (MQ=255) tCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAAt > 1:29049298/1‑68 (MQ=255) cATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAAtt < 1:47305634/68‑1 (MQ=255) gCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAAttttt < 1:46630271/68‑1 (MQ=255) ccGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTta > 1:35352758/1‑68 (MQ=255) ccGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTta > 1:42878170/1‑68 (MQ=255) aTGCGGCTACTGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATaa < 1:48924522/67‑1 (MQ=255) aTGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATaa < 1:34586248/67‑1 (MQ=255) aTGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATaa < 1:20712445/67‑1 (MQ=255) aTGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATaa < 1:6744777/67‑1 (MQ=255) aTGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATaa < 1:25549250/67‑1 (MQ=255) tGCGGCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAAtt > 1:870677/1‑68 (MQ=255) ggCTAATGTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTaa < 1:39322813/68‑1 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg > 1:24644860/1‑68 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg < 1:44770683/68‑1 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg < 1:12572964/68‑1 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg < 1:5792765/68‑1 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg > 1:16089959/1‑68 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg < 1:25011534/68‑1 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACg > 1:22982935/1‑68 (MQ=255) gTAGATCGCTGAACTTGTAGGTCTGATAAGCGAAGCGTATCAGGCAATTTTTATAATATAAACTGACg > 1:41580952/1‑68 (MQ=25) tAGATCGCTGATCTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGa > 1:12946440/1‑68 (MQ=255) tAGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGa > 1:9069735/1‑68 (MQ=255) aGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAt < 1:21386603/68‑1 (MQ=255) aGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAt < 1:11797431/68‑1 (MQ=255) aGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAt < 1:37215031/68‑1 (MQ=255) aGATCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGAt < 1:10023766/68‑1 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAgg > 1:17267279/1‑40 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:10435759/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:5047450/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:44088269/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:17810904/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:28356233/1‑68 (MQ=255) aTCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTc > 1:3183497/1‑68 (MQ=255) tCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa > 1:43703296/1‑68 (MQ=255) tCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa > 1:14588157/1‑68 (MQ=255) tCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa > 1:3877372/1‑68 (MQ=255) tCGCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa < 1:8276132/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCa > 1:9571998/1‑66 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:33146532/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:15292324/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:48234029/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:41981286/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:1098647/68‑1 (MQ=255) gCTGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAAc < 1:44471736/68‑1 (MQ=255) tGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACtt < 1:50037126/68‑1 (MQ=255) tGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACtt < 1:36655472/68‑1 (MQ=255) tGAACTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACt < 1:29438367/67‑1 (MQ=255) cTTGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTtata > 1:22526492/1‑68 (MQ=255) tGTAGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAAt < 1:24283927/68‑1 (MQ=255) aGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCt < 1:4957001/67‑1 (MQ=255) aGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCt < 1:31496575/67‑1 (MQ=255) aGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCt < 1:5512387/67‑1 (MQ=255) aGGTCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCt < 1:26138663/67‑1 (MQ=255) | GACGCTTGTTCCTGCGCTTTGTTCATGCCGGATGCGGCTAATGTAGATCGCTGAACTTGTAGGCCTGATAAGCGCAGCGTATCAGGCAATTTTTATAATTTAAACTGACGATTCAACTTTATAATCTT > CP009273/356861‑356988 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |