| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 417,885 | T→G | 13.1% | intergenic (+70/‑89) | proY → / → malZ | proline‑specific permease/maltodextrin glucosidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 417,885 | 0 | T | G | 13.1% | 2195.9 / 70.1 | 757 | intergenic (+70/‑89) | proY/malZ | proline‑specific permease/maltodextrin glucosidase |
| Reads supporting (aligned to +/- strand): ref base T (38/606); new base G (103/4); total (147/610) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 0.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 838 total aligned reads displayed.
CTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATCAGA > CP009273/417818‑417951 | cTTGCGTTCTGTAAGCCGGTTCAGGAGTAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGt < 1:13072509/68‑1 (MQ=255)cTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGt < 1:8125317/68‑1 (MQ=255) gCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcct < 1:12467962/68‑1 (MQ=255) cTGTAAGCCGGTGCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGtcctcctcc < 1:22287811/68‑1 (MQ=255) gTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTcccc < 1:27218230/68‑1 (MQ=255) gTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTcccc < 1:36178595/68‑1 (MQ=255) aaGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCa < 1:28982822/68‑1 (MQ=255) aaGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCa < 1:40805225/68‑1 (MQ=255) aaGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCa < 1:20521810/68‑1 (MQ=255) aaGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCa < 1:14446435/68‑1 (MQ=255) ccGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGGCCCCGGGCGCCGCCCCCACat > 1:26926517/1‑68 (MQ=255) ccGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCGCCCGGCGGCGGCCCCCAAat > 1:21617761/1‑68 (MQ=255) ccGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCGCCGGGCGCCGCCCCCgaag > 1:47574913/1‑67 (MQ=255) ccGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCGGCCTCCCCCaact > 1:50432990/1‑66 (MQ=255) ccGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTGCGCCCGCAAat > 1:6768879/1‑68 (MQ=255) ccGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTCCTCCCCCAAat > 1:15522386/1‑68 (MQ=255) ccGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCGCCTGCCCCcaag > 1:26662004/1‑67 (MQ=255) ttCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATc < 1:49343821/67‑1 (MQ=255) ttCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATc < 1:40285942/67‑1 (MQ=255) ttCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATc < 1:5401337/67‑1 (MQ=255) tCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATcc < 1:42820266/67‑1 (MQ=255) cAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCtt < 1:23115471/68‑1 (MQ=255) aggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCa < 1:38777794/66‑1 (MQ=255) aggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTCCTCCCCCAAATATCCTTCAga > 1:50663926/1‑68 (MQ=255) aggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTCCGCCCCCAAATATCCTTCAga > 1:27708405/1‑68 (MQ=255) aggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCGCCTCGCCCAGATATCCTTCAgg > 1:46252788/1‑67 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:4987120/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:13428138/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:13983339/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:34939010/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:7912170/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:28722915/67‑1 (MQ=255) ggaAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAga < 1:28311385/67‑1 (MQ=255) gaAATCCTGATCCGGCTATTGCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatg < 1:31639127/68‑1 (MQ=255) aaTCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatga < 1:180350/67‑1 (MQ=255) aaTCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatga < 1:30222369/67‑1 (MQ=255) aaTCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAgatga < 1:17737193/67‑1 (MQ=255) tCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCTTCCTCCTCCCCCAAATATCCTTCAGAtgatga < 1:21079472/68‑1 (MQ=255) tCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGAtgatga < 1:48093936/68‑1 (MQ=255) tCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGAtgatga < 1:15896581/68‑1 (MQ=255) tCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCTCCTCCCCCAAAAATACATGAGAtgatga > 1:43755282/1‑68 (MQ=255) ccTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGGCCGCCGCCCCCCAATATCCTTCAGAGGATGAg > 1:23910993/1‑68 (MQ=255) gATCCGGCTTTTCCGATAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGa < 1:29323823/68‑1 (MQ=255) aTCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCGCCAAATATCCTTCAGATGATGAGTGAt < 1:19177192/68‑1 (MQ=255) aTCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:32508839/68‑1 (MQ=255) tCCGGCTATTCCGAATGTTATCCGCCCCCGTCCTCGTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:7198584/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCGCCCGTCCGCCTCCCCCAAATATAATTCAGGTGATGATTGGTc > 1:18744125/1‑68 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:40123263/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:44158988/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:37344428/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:45191283/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:46675905/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:15198491/67‑1 (MQ=255) tCCGGCTATTCCGAAAGTTATCCGCCCCCGACCGCCACCCCCAAAAAAACTAAAAATGATTAGTGaa > 1:10061522/1‑66 (MQ=255) tCCGGCTATTCCGAAAGTTACCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:43237726/67‑1 (MQ=255) tCCGGATATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGAt < 1:29788610/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCGCCCGGCCGCCGCCCCCAAAAAACCTTCAGATGATGAGTGATCCAGCa > 1:17005026/1‑68 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCGCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:5934216/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:45519473/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:4594708/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:7611687/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:42621182/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:8661537/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:9135507/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:10812428/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:24411213/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:11415339/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:3336034/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGc < 1:17374098/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCT‑CCCCAAATATCCTTCAGATGATGAGTGATCCTGCa < 1:34587446/67‑1 (MQ=255) cTATTCCGAAAGTTATCCGCCCCCGTCCTCCGCCCCCACAAATCCTTCAGATGATGAGTGGTCGTGCa > 1:44910636/1‑68 (MQ=255) tCCGAAAGTTATCCGCCCCGGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAg < 1:11994925/68‑1 (MQ=255) tCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAg < 1:41452965/68‑1 (MQ=255) tCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAg < 1:41857433/68‑1 (MQ=255) tCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAg < 1:3555567/68‑1 (MQ=255) tCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAg < 1:30952209/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:44541183/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:48492412/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:25146176/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:20009849/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:18287822/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:1164053/68‑1 (MQ=255) ccGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAgg < 1:9704994/68‑1 (MQ=255) cGAAAGTTATCCGCCCCCGTCCTCCACCCCCAAATATCCTTCAGATGATGAGTGATCCTGCAGTAGGc > 1:33741756/1‑68 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:25616751/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:16197925/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:2480634/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:39661398/68‑1 (MQ=255) aaGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTAt < 1:26507821/68‑1 (MQ=255) aaGTTATCCGCCCCCGGCCGCCTCCCCCAAATAAACAAAAGATGATGAGTGCTCCTGCTATAGGCTAt > 1:16533976/1‑68 (MQ=255) aGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATg < 1:6249488/68‑1 (MQ=255) aGTTATCCGCCCCCGTCCGCCGCCCCCAAAAAAACATCAGATGATGAGTGATCCTGCATTAGTCGATg > 1:38310826/1‑68 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:36597411/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:14754447/68‑1 (MQ=255) cGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGt < 1:39301207/68‑1 (MQ=255) gCCCCCGTCCTCCTCCCCCAAATATACTTCAGATGATGATTGATACGGCATTAGGCTATGGCAAGGTg > 1:22720948/1‑68 (MQ=255) gCCCCCGTCCTCCTCCCCCAAAAATCCTTCAGATTATGAGTGATCCGGCATTAGGAGATGGCAAGGTg > 1:42370665/1‑68 (MQ=255) ccccGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGa < 1:26132359/67‑1 (MQ=255) ccccGTCCTCCTACCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGa < 1:37713872/67‑1 (MQ=255) gTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATCAGa < 1:19644144/68‑1 (MQ=255) | CTTGCGTTCTGTAAGCCGGTTCAGGAGGAAATCCTGATCCGGCTATTCCGAAAGTTATCCGCCCCCGTCCTCCTCCCCCAAATATCCTTCAGATGATGAGTGATCCTGCATTAGGCTATGGCAAGGTGATCAGA > CP009273/417818‑417951 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |