BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	221943 =	NA (NA)	39 (0.130)	10/94	NT	NA	noncoding (76/77 nt)	ileV	tRNA‑Ile
*	?	CP009273	221964 =	NA (NA)	39 (0.130)	10/94	NT	NA	intergenic (+20/‑23)	ileV/alaV	tRNA‑Ile/tRNA‑Ala

Only 100 of 311 total aligned reads displayed.

GCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/222017‑221943

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaatttgAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGA  >  CP009273/221964‑222030

GCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGg                                                                            >  1:29387399/1‑67

GCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGC                                                                            >  1:10066005/1‑68

GCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGC                                                                            >  1:3820826/1‑68

GCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGC                                                                            >  1:4062775/1‑68

GCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGC                                                                            >  1:1652315/1‑68

GCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGC                                                                            >  1:5286695/1‑68

GCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGC                                                                            >  1:12957746/1‑68

GCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGC                                                                            >  1:9139588/1‑68

GCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTATTCAAATTTGCCGTGC                                                                            >  1:26288097/1‑68

    GCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAAT                                                                        >  1:24903729/1‑68

     CGCTCTCCCATCTGAGCTATAGCCCCATAACTTGTTGTTAAAACCTCTTCAAATTTGCCGTGCAA                                                                          <  1:4292541/65‑1

     CGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATT                                                                       >  1:4156987/1‑68

     CGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATT                                                                       >  1:16720800/1‑68

     CGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAAT                                                                        <  1:23102097/67‑1

     CGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAA                                                                         <  1:25398408/66‑1

     CGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAA                                                                         <  1:28061589/66‑1

     CGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAA                                                                         <  1:940900/66‑1

     CGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAA                                                                          <  1:17588761/65‑1

     CGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAA                                                                          <  1:6857610/65‑1

     CGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAA                                                                          <  1:24494934/65‑1

     CGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAA                                                                          <  1:7497228/65‑1

     CGCTCTCCCAGCTGAGCTATAGCCCCAAAACATGTAGTTAAAACCTCTTCAAATTTGCCGTCCAAA                                                                         <  1:3464246/66‑1

      GCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTT                                                                      >  1:22793832/1‑68

       CTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     >  1:20915188/1‑68

       CTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     >  1:18022141/1‑68

       CTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     >  1:20484360/1‑68

       CTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     >  1:12910924/1‑68

        agTCCCAGTTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:10683480/65‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAATCCGTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:27537059/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:2236698/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:2378649/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:25251394/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:25300478/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:29539492/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:27025205/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:2073783/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:8259568/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:2001683/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:10856308/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:4810885/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:5472535/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:14528823/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:14876945/67‑1

        TCTCCCAGCTGAGCTATAGCCCCATAACATGTACTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG                                                                     <  1:5134795/67‑1

                            CCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGAAGAGGTTTTAACTACATG                                                  <  1:26245589/66‑1

                                 AACATGTAGTTAAAACCTCTTCAAATTTGCCGAGCAAATTTGAAGAGGTTTTAACTACATGTTATGGG                                           <  1:27994377/68‑1

                                  ACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGG                                          <  1:28737407/68‑1

                                  ACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGG                                          <  1:4546327/68‑1

                                  ACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGG                                          <  1:24576920/68‑1

                                    ATGTAGTTAAAACCTCTTCAATTTTGCCGTGCAAATTTGAAGAGGTTTTAACTACTTGTTATGGGGCT                                        <  1:18799736/68‑1

                                    ATGTAGTTAAAACCTCTTCAAATTTCCCGTCCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCT                                        <  1:11101950/68‑1

                                           TAAAACCTCTTCAAATTTGCCGTGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGC                                   <  1:150923/66‑1

                                           TAAAACCTCTTCAAATTTGCCGTGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGC                                   <  1:9587763/66‑1

                                            AAAACCTCTTCAAATTTGCCGTGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCA                                <  1:26895888/68‑1

                                            AAAACCTCTTCAAATTTGACGTGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCA                                <  1:9531148/68‑1

                                             AAACCTCTTAAAATTTGCCGTGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAG                               <  1:13706052/68‑1

                                               ACCTCTTCAAATTTGCCGTGCAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCT                             <  1:1272251/68‑1

                                                                   CAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGC          <  1:6169752/67‑1

                                                                   CAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGC          <  1:27165977/67‑1

                                                                   CAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGC          <  1:28327280/67‑1

                                                                   CAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGC          <  1:10357979/67‑1

                                                                   CAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGC          <  1:29819136/67‑1

                                                                   CAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGC          <  1:17928834/67‑1

                                                                   CAAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGC          <  1:21587007/67‑1

                                                                    AAATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCAC        >  1:26577486/1‑68

                                                                     AATTTGATGAGGTTTTAACTAGATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACG       <  1:19378469/68‑1

                                                                     AATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACG       <  1:15807505/68‑1

                                                                     AATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACG       <  1:9887401/68‑1

                                                                     AATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACG       <  1:11821098/68‑1

                                                                     AATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACG       <  1:8454093/68‑1

                                                                     AATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACG       <  1:12461692/68‑1

                                                                     AATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACG       <  1:5892081/68‑1

                                                                     AATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACG       <  1:25903942/68‑1

                                                                     AATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACG       <  1:23969198/68‑1

                                                                     AATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACG       <  1:21774734/68‑1

                                                                     AATTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACG       <  1:23532034/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:21295001/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:10465979/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:11336780/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:25747775/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:8775121/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:765202/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:7356123/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:12697977/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:13241979/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:15350939/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:15406875/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     >  1:4699195/1‑68

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:18584895/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:18948273/68‑1

                                                                       TTTGAAGAGGTTTTAACTACATGGTATGGCGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCA     <  1:1667695/68‑1

                                                                         TGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGG   <  1:28486811/68‑1

                                                                         TGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGG   <  1:28927999/68‑1

                                                                         TGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGG   >  1:3893203/1‑68

                                                                         TGAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGG   <  1:19820424/68‑1

                                                                          GAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGA  <  1:5713519/68‑1

                                                                          GAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGA  <  1:12172724/68‑1

                                                                          GAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGA  <  1:1626680/68‑1

                                                                          GAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGA  <  1:11881723/68‑1

                                                                          GAAGAGGTATTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGA  <  1:11414734/68‑1

GCAGGCGCTCTCCCAGCTGAGCTATAGCCCCATAACATGTAGTTAAAACCTCTTCAAATTTGCCGTGCAAATTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/222017‑221943

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaaatttgAAGAGGTTTTAACTACATGTTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGA  >  CP009273/221964‑222030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.