| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 360096 | 327 (0.910) | 1599 (4.520) | 35/110 | NT | 82.0% | intergenic (‑30/+565) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3508417 = | 380 (1.070) | coding (2/678 nt) | rpe | D‑ribulose‑5‑phosphate 3‑epimerase | |||||
Only 100 of 1772 total aligned reads displayed.
GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/360029‑360096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG > CP009273/3508417‑3508483 GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC > 1:5163045/1‑68 cagTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAA < 1:12301315/65‑1 agTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAA > 1:12587455/3‑67 agTGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAA > 1:5865897/3‑67 TGATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCC < 1:29543255/39‑1 gaaAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTAATTTTTCGCGGGTGAAACG > 1:24736288/4‑67 GATAAGCTGTCAAACATGAGAATTCCTTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:18251761/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGA < 1:10006056/68‑1 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:24524999/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:16098347/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:17504092/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:18746725/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:18999818/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:6660397/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:6131262/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:5636236/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:10217370/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:27187357/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:28162954/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:29243635/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:3763236/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:9508055/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:15502114/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:14434336/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTAGCGGGTGAAACG > 1:22078452/1‑67 GATAAGCTGTCAAACATGAGAATTCCATCCGATTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACG > 1:16605029/1‑67 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:11688402/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:25602202/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:12883850/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:13488088/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:14173196/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:21238198/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:10502596/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:1717449/68‑1 TAAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT < 1:7200301/68‑1 AAGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:2525456/1‑67 AGCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCC < 1:7972730/68‑1 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:19770238/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:27450345/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:2663820/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:2619319/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:2593194/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:27723902/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:1188579/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:2841955/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:5382570/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:917736/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:19142157/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:20072732/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:3229986/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:2987822/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:14950291/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:10936883/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:1847135/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:2230379/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACT > 1:13854216/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTATTCGCGGGTGAAACGACT > 1:2863920/1‑65 GCTGTCAAACATGAGAATTCCATCCGCTTCTCCATGAGAATTATTTTTTCGCGGGTGAAACGACTaat > 1:20914692/1‑65 TGTCGAACATGAGAATTCCGTCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:26427773/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:4494081/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:27899637/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:41582/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:4899338/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:26935180/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:24299640/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:23832445/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:19452543/68‑1 TGTCAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGG < 1:6936062/68‑1 CAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTT > 1:16914233/1‑68 CAAACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTT > 1:11206280/1‑68 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:14668010/1‑68 AACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:21728974/1‑68 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:25012435/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:28827946/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:22528233/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTA < 1:9338355/68‑1 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:29125444/1‑67 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:2035043/1‑67 ACATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGT > 1:8391689/1‑67 ATGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACA > 1:2404406/1‑68 TGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAA < 1:21463349/68‑1 TGAGAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAA < 1:7480409/68‑1 ctcAATGCCATCCGCTTCTCCTTGTTATTTATTTTTTC‑CGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:15188812/65‑1 GAATTCCATCCGCTTCTCCTTGAGTATTATTTTTTCGCGTGTGAAACGACTCCTGGTGTGTACAAAG < 1:20615200/67‑1 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGTTGAAACGACTCCTGGTTTGTACAAAG < 1:13252563/67‑1 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:22797257/67‑1 GAATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAG < 1:17826945/67‑1 AATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCC > 1:23473763/1‑68 AATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCC > 1:1147064/1‑68 AATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCC > 1:646513/1‑68 ATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCA > 1:9793723/1‑68 ATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC < 1:23679779/66‑1 ATTCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGC < 1:8082730/66‑1 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC < 1:15819593/68‑1 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:8549834/1‑68 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:770442/1‑68 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:23044950/1‑68 TCCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGC > 1:3443759/1‑68 CCATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCA < 1:8840623/68‑1 CATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG < 1:1635106/68‑1 GGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/360029‑360096‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cATCCGCTTCTCCTTGAGAATTATTTTTTCGCGGGTGAAACGACTCCTGGTTTGTACAAAGCCAGCAG > CP009273/3508417‑3508483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |