| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 360104 = | 311 (0.860) | 477 (1.330) | 64/112 | NT | 60.5% | intergenic (‑38/+557) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | = 360286 | NA (NA) | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor | |||||
Only 100 of 565 total aligned reads displayed.
TTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/360170‑360104‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTT < CP009273/360286‑360221 TTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTA < 1:23731656/68‑1 GAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAAT < 1:6537737/68‑1 ACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT > 1:24076123/1‑67 ACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT > 1:12009179/1‑67 ACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATT > 1:6100724/1‑67 GTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCC > 1:10325892/1‑67 tAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGC < 1:14712640/67‑1 GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGC < 1:9122408/68‑1 GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGC < 1:23332709/68‑1 GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGC < 1:15986855/68‑1 GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGC < 1:1524270/68‑1 GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGC < 1:21427794/68‑1 GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGC < 1:19553052/68‑1 GAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATAAATTCCCCAGGC < 1:6958205/68‑1 GCAACGGCCCGGAGGGTGGCGGGCAGGCCGCCCGCCCTAAACTGCCAGGAATTAATTACCCAGGCATC > 1:12487671/1‑68 GCAACGGCCCGGAGGGTGGCGGGCAGGCCGCCCGCCATAAACAGCCAGGAATTAATTCCCCAGGCATC > 1:17669831/1‑68 GCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTGCCCCGGCATC > 1:15412995/1‑68 GCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATC > 1:6824800/1‑68 GCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATC > 1:18942936/1‑68 GCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATC > 1:3642692/1‑68 tACGGGCCGGAGGGTGGCGGGAAGGACGCCCGCCATAAACTGCCAGTAATTAATTCCCCAGGCATCAA < 1:27442361/67‑1 AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAA > 1:243419/1‑68 AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAA > 1:16218546/1‑68 AACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACAGCCCCGAATTAATTCCCCAGGCATCAA > 1:28993090/1‑68 ACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTTCCAGGAATTAATTCCCCAGGCATCAAA < 1:14350475/68‑1 CCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAA > 1:22664746/1‑68 CCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAA > 1:11783476/1‑68 CGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAAC < 1:16491751/68‑1 CGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAAC < 1:12294482/68‑1 GGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACG > 1:13161210/1‑68 GGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACG < 1:1428906/68‑1 AGGGTGGCGGGCAGGCCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAA > 1:14005083/1‑68 AGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAA > 1:7299281/1‑68 AGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAA > 1:3976349/1‑68 AGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAA > 1:29096268/1‑68 AGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGA < 1:10137362/67‑1 GGGTGGCGGGCAGGCCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATTAAACGAAA > 1:25678705/1‑68 GGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGC < 1:27886409/67‑1 GGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATTAAATCCCCAGGCATCAAATAAAACGAAAGGC > 1:22506797/1‑67 GCGGGCAGGCCGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCTTCAAATAAAACGAAAGGCTC > 1:8441237/1‑68 GGGCAGGACGCCCGCCATAAACTGCCAGTAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAG < 1:25063111/68‑1 GGGCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAG < 1:20030235/68‑1 GCAGGACGCCCGCCATAAACTGCCAGGAATTAATTCACCAGGCATCAAATAAAACGAAAGGCTCAGTC > 1:1808778/1‑68 ctGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:25966036/65‑1 catGACGCCCGCCATAAACTGCCAGGATTTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:26210441/64‑1 atGGACGACCGCCTTAAAGTGCCATGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:26578317/65‑1 CAGGACGCCCGCCATAAACTGCCATGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:24597138/67‑1 CAGGACGCCCGCCATAAACTGCCAGTAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:29643367/67‑1 CAGGACGCCCGCCATAAACTGCCAGTAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:8257398/67‑1 CAGGACGCCCGCCATAAACTGCCAGTAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:16933436/67‑1 CAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:7750160/67‑1 CAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:9794182/67‑1 CAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:795309/67‑1 CAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:2993566/67‑1 CAGGACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:10187621/67‑1 CAGGACGCCCGCCATAAACTGCAAGTAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTC < 1:20335874/67‑1 ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAG > 1:111343/1‑68 ACGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAG > 1:4314444/1‑68 cggCCGCCATAAACTGCCAGGAATTAATTCCCTAGGCATCAAATAAAACGAAAGTCTCAGTCGAAAG < 1:20425692/64‑1 CGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGA < 1:9559892/68‑1 CGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGA < 1:17317704/68‑1 CGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGA < 1:11414329/68‑1 CGCCCGCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAG < 1:18296113/67‑1 CGCCCGCCATAAACAGCCAGTAATAAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGA < 1:15043858/68‑1 CGCCCGACATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGA < 1:2731167/68‑1 GCCATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG < 1:16313384/68‑1 CCATAAACTGCCAGTAATTAATTCCCCAGTCATAAAATAAAACGAAAGGCTCAGTCGAAAGACTGGG < 1:28373063/67‑1 CATAAACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCC < 1:21612659/68‑1 ATAAACTTCCAGTAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCT < 1:14530949/68‑1 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGGCTGGGCCGTTgg > 1:5817455/1‑66 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGCCTGGGCCTTTCG > 1:16696246/1‑68 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG > 1:13522360/1‑68 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG < 1:12964349/68‑1 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG > 1:3837022/1‑68 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG > 1:3279467/1‑68 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG < 1:23113391/68‑1 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG < 1:29397000/68‑1 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG > 1:17454147/1‑68 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG > 1:192221/1‑68 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG > 1:28171556/1‑68 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCG < 1:18780781/68‑1 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCATTTCG > 1:10031226/1‑68 ACTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCACAGTCGAAAGACTGGGCCGTTCG > 1:28525560/1‑68 CTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT < 1:6403045/68‑1 CTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT > 1:26882975/1‑68 CTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT < 1:21319031/68‑1 CTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT > 1:12760009/1‑68 CTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGT < 1:10836799/68‑1 CTGCCAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGAATGGGCGTTTCGT > 1:5008130/1‑68 catGAATTAATTCCCCAGGCATCAAATACAACGAAAGGCTCCCTCGAAAGACTGGGCCTTTCGTTTTA < 1:17902379/65‑1 CAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTA < 1:23439303/68‑1 CAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTA < 1:2489123/68‑1 CAGGAATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCGTTAGTATTA > 1:1382611/1‑68 acTAATTCCCCAGGCATCAAATACACCGAACGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT < 1:4773458/66‑1 aaTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT < 1:25451171/66‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT < 1:7586667/68‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT > 1:22048868/1‑68 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT < 1:20597312/68‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGT < 1:5288358/68‑1 ATTAATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTG < 1:8836360/67‑1 TTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGAATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/360170‑360104‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATTCCCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTT < CP009273/360286‑360221 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |