| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 964816 = | 144 (0.400) | 11 (0.040) | 5/94 | NT | 7.7% | intergenic (+8/‑29) | lpxK/ycaQ | lipid A 4'kinase/DUF1006 family protein with C‑terminal wHTH domain |
| ? | CP009273 | 964858 = | 143 (0.470) | coding (14/1233 nt) | ycaQ | DUF1006 family protein with C‑terminal wHTH domain | |||||
GGTGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/964890‑964816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgcACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCC > CP009273/964858‑964920 GGTGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAAC > 1:19670553/1‑67GGTGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAAC > 1:19637382/1‑67 TGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACG < 1:9847715/66‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT > 1:2427203/1‑67 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:9062448/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:7995835/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:5949997/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:29792172/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:29764477/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:29057895/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:27695337/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:23809690/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:19978203/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:18315982/67‑1 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT > 1:15387650/1‑67 GAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCT < 1:12290973/67‑1 AAGATTACGCGCATCAGGAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGC < 1:22304090/68‑1 AGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCC > 1:24441178/1‑68 AGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGC < 1:6296758/67‑1 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:7240347/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:28682028/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:14693903/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:14186903/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:4562005/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:494570/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:214525/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:2060171/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:19480877/1‑68 ATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:9560580/1‑68 ATTACGCGCATCAGCAAGGAAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:16153897/1‑68 ATTACGCGCATCAGCAAGGAAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC > 1:16187942/1‑68 ttcCGCGCATCAGAAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCA < 1:15916984/65‑1 TTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCA < 1:9662146/68‑1 ACGCGCATCAGCAAGGGAGAGGTGCGGCAGCTACATTCATGACTCCATCAATCGAACGCTGCCGCACC < 1:9722770/68‑1 ACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACC < 1:3011426/68‑1 ACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACC < 1:3625241/68‑1 CGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCT < 1:2253456/68‑1 GCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTC < 1:17941517/68‑1 GCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCT < 1:13273056/67‑1 GCATCAGCAAGGGAGAGGGGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCT < 1:714183/67‑1 CATCAGCAAGGGAGAGGGGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCC < 1:2898295/68‑1 ATCAGCAAGGGAGAGGGGCGGCAGCTACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCC < 1:13702026/67‑1 gcGGTGCGGCCGCGACATTCATGACGCCATCAATCGAACGCTGCCGCACCTCGCCCTTGCTGATGCGC < 1:21931761/66‑1 cAGGTGGGGCAGCGACATTCATGACTCCATCAATCGACCGCTGCCGCACCTCTCCCTTGCTGATGCG < 1:22089334/66‑1 GAGGGGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCG < 1:3990946/67‑1 gggGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGC < 1:113355/63‑1 ATCAATCGAACGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCT < 1:25165167/68‑1 CGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAA < 1:23291129/67‑1 CGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAA < 1:29464007/67‑1 CGCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAA < 1:29429697/67‑1 GCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAA > 1:1004264/1‑67 GCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAA > 1:1252782/1‑67 GCTGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAA > 1:14182469/1‑67 TGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC < 1:29306264/67‑1 TGCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACC < 1:18985854/67‑1 GCCGCACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCC < 1:7209351/68‑1 GGTGAAGATTACGCGCATCAGCAAGGGAGAGGTGCGGCAGCGACATTCATGACTCCATCAATCGAACGCTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/964890‑964816‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctgccgcACCTCTCCCTTGCTGATGCGCGTAATCTTCACCTTGCCGCACAAGGCCTGTTAAACAAACCCC > CP009273/964858‑964920 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |