New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1092557NA (NA)10 (0.030)
+GC		 7/108 NT NA intergenic (+272/+464) ycdU/serX putative inner membrane protein/tRNA‑Ser
?CP009273 = 1092559 NA (NA)intergenic (+274/+462) ycdU/serX putative inner membrane protein/tRNA‑Ser

TGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092533‑1092557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  CP009273/1092559‑1092499
                         ||                                                             
TGCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGC                       >  1:21528064/1‑67
 GCGTTCACGGTCTGTCCAACTGGCGCCCGCCAGTTGGCCAGCCCGTGCACGCAGTGAGCGGGCTGCCC                     >  1:18510383/1‑68
 GCGTTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCC                     >  1:2765127/1‑68
  CGTTCACGGTCTGTCCAACTGGCGTCAGCCAGGTGGGCATACCGTGAACGCAGTGAGCGGGCTGCCC                     >  1:20883663/1‑67
   GTTCACGGTCTGTCCAACTGGCGGCAGGCAGTTGGACAGCCCGTGAACGCAGTGAGCGGGCTGCCCGC                   >  1:2807353/1‑68
    TTCACGGTCTGTCCAACTGGCGCCAGCCAGTTGGCCAGCCCGTGCACGCAGTGAGCGGGCTGCCCGCc                  >  1:9201705/1‑67
          GTCTGTCCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGA            >  1:4201824/1‑68
               gaCAACTGGCGCCAGCCAGTTGGACAGACCGTGCACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAA       <  1:6225330/66‑1
               gCCACCTCGCGCCCGCCATGTGCACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAA       <  1:12673527/67‑1
                aCAACTGGCGCCAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAA       >  1:15083969/2‑67
                    ctcGCGCCTGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  1:10630297/65‑1
                    CTGGCGCCACCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  1:17135998/68‑1
                         ||                                                             
TGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1092533‑1092557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG  <  CP009273/1092559‑1092499

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.