New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1161581193 (0.540)8 (0.020)
+G		 6/110 NT 5.1% coding (41/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase
?CP009273 1162078 = 111 (0.310)coding (538/1305 nt) ndh respiratory NADH dehydrogenase 2/cupric reductase

TTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161527‑1161581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAA  >  CP009273/1162078‑1162121
                                                       |                                            
TTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTA                                  >  1:588579/1‑68
    GGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGCCGGGTGTTGAAC                              >  1:20598198/1‑68
     GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGAGTGGTGTTGAAat                             >  1:7127673/1‑66
     GGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTA                                  >  1:14054565/1‑63
      GGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAAC                              >  1:803284/1‑66
                 ACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAATT                 >  1:14270298/1‑68
                                 AGATTGTGATTGTCGGCGGCGGGGCGACTGGGGTTGAACTCTCCGCTGAAGTGCGCAAGGCGGTCca  >  1:26067698/1‑65
                                 AGATTGTGATTGTCGGCGGCGGGGCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAg  >  1:4355125/1‑66
                                                       |                                            
TTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/1161527‑1161581
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGACGGGTGTAGAACTCTCCGCTGAATTGCACAACGCGGTCAA  >  CP009273/1162078‑1162121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.