New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 2849789NA (NA)3 (0.010)
+C		 3/110 NT NA noncoding (5/24 nt) REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences
?CP009273 = 2849802 NA (NA)noncoding (18/24 nt) REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences

ATAAATCGGCATTGATTTAACTGCAAATTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2849756‑2849789
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCAGATCTGTCCGGCAATTTGCAGTTAAATCAATGCCGATTTATCAATT  <  CP009273/2849802‑2849751
                                  |                                                    
ATAAATCGGCATTGATTTAACTGCAAATTGCCGGCCAGGCAGATCTGTCCGGCAATTTGCAGTTAAA                      >  1:883793/1‑67
     TCGGCATTGATTTAACTGCAAATTGCCGGCCAGGCAGATCTGTCCGGCAATTTGGAGTTAAATCAAT                 >  1:10976596/1‑67
                    CTGCAAATTGCCGGACAGGCAGATCTGTCCGGCAATTTGCAGTTAAATCAATGCCGATTTATCAATT  >  1:4607206/1‑67
                                  |                                                    
ATAAATCGGCATTGATTTAACTGCAAATTGCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2849756‑2849789
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGGCAGATCTGTCCGGCAATTTGCAGTTAAATCAATGCCGATTTATCAATT  <  CP009273/2849802‑2849751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.