| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 4,173,033 | 63 bp x 2 | 40.8% | duplication | rpoB → | RNA polymerase, beta subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4173033 = | 397 (1.100) | 303 (0.910) | 52/104 | NT | 40.8% | coding (1861/4029 nt) | rpoB | RNA polymerase, beta subunit |
| ? | CP009273 | = 4173095 | 512 (1.530) | coding (1923/4029 nt) | rpoB | RNA polymerase, beta subunit | |||||
Only 100 of 360 total aligned reads displayed.
AAGCTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4173103‑4173033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggaTTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGAGTTC < CP009273/4173095‑4173029 CTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGA > 1:3704029/1‑68 TGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGG < 1:22079128/66‑1 TGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGG < 1:22487763/66‑1 TTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTag > 1:3766200/1‑65 TTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCG > 1:13370242/1‑67 TTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCG > 1:12732291/1‑67 TTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCG > 1:24164259/1‑67 TTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTAGGATTCGC < 1:1452634/68‑1 TCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCC < 1:28813489/68‑1 TCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCC < 1:15668590/68‑1 CCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTT > 1:25139544/1‑68 CCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTAGCCTTT > 1:1691777/1‑68 GCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTAC < 1:6316297/68‑1 CTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACG > 1:1289445/1‑68 TACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGG < 1:29472651/68‑1 TACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACG < 1:24421850/67‑1 TACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACG > 1:10042751/1‑67 CGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCA < 1:27011773/68‑1 GGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAA < 1:4518897/68‑1 GGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAA < 1:17142756/68‑1 GCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAG > 1:15775437/1‑68 AAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGT < 1:29710918/67‑1 AAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGT < 1:28654373/67‑1 AAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGT < 1:17254531/67‑1 AAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGT < 1:16773941/67‑1 AGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTA < 1:13628079/68‑1 AGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTA < 1:25233620/68‑1 CAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGT < 1:7015727/68‑1 CAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGT < 1:6096563/68‑1 CAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGT < 1:18066430/68‑1 CAGGTCTTCTACGAAGTGGCCTTCTTCATCCAACTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGT < 1:9036338/68‑1 GGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:2893486/1‑68 GGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:10299635/1‑68 GTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:25643045/1‑67 GTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT > 1:23020223/1‑67 GTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTAGCCTTTTCTACGGCAAGTTACCAGGTCT > 1:14674859/1‑67 TCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT < 1:10373721/66‑1 TCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCT < 1:23901987/66‑1 CTTCTACGAAGTGGCCTTCTTCATCCCAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTC < 1:2818214/67‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCT > 1:27359443/1‑68 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTC < 1:19920108/67‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTC < 1:8891875/67‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTC < 1:15303679/67‑1 CTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTC < 1:11440430/67‑1 TACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGA > 1:16441356/1‑68 TACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGA < 1:25394553/68‑1 TACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGA < 1:8631530/68‑1 aaGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA > 1:5293394/3‑68 ACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCATGTTACCAGGTATTCAACGAt > 1:12065151/1‑67 ACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA > 1:3278373/1‑68 ACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA > 1:4307120/1‑68 ACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA > 1:6570484/1‑68 ACGAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAA > 1:17775516/1‑68 GAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGT > 1:11219061/1‑68 GAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGT > 1:12260256/1‑68 GAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGT > 1:16180544/1‑68 GAAGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTAAGGCAAGTTACCAGGTCTTCTACGAAGT > 1:2360409/1‑68 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTAGCAGGTCTTCTACGAAGTG > 1:21688441/1‑67 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGG < 1:29267270/68‑1 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTG > 1:10867113/1‑67 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTG > 1:15111586/1‑67 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTG > 1:21059910/1‑67 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTG > 1:574612/1‑67 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTG > 1:19129117/1‑67 AGTGGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTG > 1:28329628/1‑67 GGCCTTGTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGC < 1:26288526/66‑1 GGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGC < 1:8439202/66‑1 GGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGC < 1:7811656/66‑1 GGCCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGC < 1:9185407/66‑1 GGCCGTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGC < 1:15828521/66‑1 CCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCT > 1:10253399/1‑66 CCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCT > 1:18704117/1‑66 CCTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCT > 1:19303942/1‑66 CTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCT > 1:5408207/1‑68 CTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTC < 1:9654165/67‑1 CTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTC < 1:8133753/67‑1 CTTCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTC < 1:3932538/67‑1 TCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTC > 1:5081791/1‑68 TCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTC < 1:13800906/68‑1 TCTTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTC > 1:26644070/1‑68 TTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCAT < 1:20345308/68‑1 TTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCA > 1:21275673/1‑67 TTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCA > 1:27662180/1‑67 TTCATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCA > 1:26181623/1‑67 CATCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCC < 1:24722737/68‑1 TCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAA < 1:14016942/68‑1 TCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAA > 1:14249546/1‑68 TCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAA < 1:29311809/68‑1 TCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAA < 1:18864682/68‑1 TCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAA < 1:4740083/68‑1 TCCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCAACCAA < 1:17582858/68‑1 CCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAG > 1:6767224/1‑68 CCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAG > 1:15960681/1‑68 CCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCA > 1:10520810/1‑66 CCAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATACAAG > 1:24583761/1‑68 CAAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGT < 1:20624313/68‑1 AAGTTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTT < 1:21851784/68‑1 TGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGAG > 1:27748477/1‑68 TGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGG < 1:20979476/66‑1 ATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGAGTTC > 1:19787501/1‑68 AAGCTGGATTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4173103‑4173033‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggaTTCGCCTTTGCTACGGCAAGTTACCAGGTCTTCTACGAAGTGGCCTTCTTCATCCAAGTTGGAGTTC < CP009273/4173095‑4173029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |