| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4535241 = | 413 (1.150) | 4 (0.010) | 3/94 | NT | 1.2% | coding (329/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher |
| ? | CP009273 | 4535424 = | 341 (1.130) | coding (512/2637 nt) | fimD | fimbrial usher outer membrane porin protein; FimCD chaperone‑usher | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4535315‑4535241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgtgGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGG > CP009273/4535424‑4535490 AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:546826/1‑68AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:20534732/1‑68 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGa > 1:6197204/1‑66 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:23882969/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:2376950/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:10644427/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:26570410/1‑67 GGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC > 1:16885563/1‑67 CATCATCCGCCAGCAGATTCATACCGGCGACAGACGCCGTATTCAGCCCCAAACTCGCGAGTTGCGC > 1:7389441/1‑67 CATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGC < 1:3263360/67‑1 CATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC < 1:26432117/65‑1 CATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGC < 1:25562951/65‑1 CATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACAGGCGAGTTGC < 1:10027651/65‑1 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:19270747/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:12494524/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:15789744/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:5745470/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:16413173/1‑68 ATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGC > 1:10136448/1‑68 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG > 1:4863373/1‑68 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:19098262/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:18757861/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:3767458/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:10024297/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:26114376/68‑1 TCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCG < 1:29420121/68‑1 CATCCGCCAGCAGATTCCTACCGGCGACAGAACCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:1128613/68‑1 CATCCGCCAGCAGATTCATCCCGGCGACAGAAGCCGTATTCAGCCCCATATTGGCGAGTTGCGCGCGT < 1:19149279/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:25652984/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:29032158/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:28463015/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:27605075/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT > 1:23914704/1‑68 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:24972776/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:24956835/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:24461772/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:20683783/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:23050049/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:4231638/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:11885155/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:9489425/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:15724447/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:10083106/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:14491966/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:14888621/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:14829533/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGT < 1:14559920/68‑1 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGAGCGCGT > 1:27958557/1‑68 CATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACAGGCGAGTTGCGCGCGT < 1:5331842/68‑1 ATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:24460660/68‑1 ATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG < 1:13046617/68‑1 aCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTAAGCCCCATACTGGCGACTTGCGCGCGTG > 1:26139442/2‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGCGTTGCGCGCGTG > 1:8028409/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:18105607/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:10475791/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:27082405/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:11729682/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:17484905/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:16707722/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:9423549/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:8248435/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:15606987/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:13209663/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:14081476/1‑67 TCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG > 1:23052815/1‑67 CCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGT < 1:12934779/68‑1 TTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTGGTTATATTCCT < 1:11106263/66‑1 ATACCGGCGACAGAAGCCGTATTCAGCCCCCTACTCGCGAGTTGCGCGCGTGGTTATATTCCTCCTGA < 1:9436975/68‑1 ACCGGCGACCGAACCCGTATTCAGCCCCAAACTGGCGAGTTGCGCGCGTGGTTATATTCCTCCTGAGT < 1:13815377/68‑1 ACCCGCGACAGACGCCGTATTCAGCCCCATACTGGCGAGGTGCGCGCGTGGTTATATTCCTCCTGAGT < 1:28181340/68‑1 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:9897529/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:29117669/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:3442024/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:6965537/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:26691147/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:11436125/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:24019980/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:24936181/1‑68 CGCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT > 1:25693663/1‑68 GCGCGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATT < 1:4518867/67‑1 CGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCA > 1:2872103/1‑67 CGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCA > 1:12562878/1‑67 CGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCA > 1:14564254/1‑67 CGTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCA > 1:1521746/1‑67 ggGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAG < 1:15089586/65‑1 GTGGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGACTGCTCAATTATAATTTCAG < 1:12992872/67‑1 GGTTATTTTCCTCCTGTGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:1189735/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGG > 1:16244422/1‑68 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:4580912/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:4809612/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:1904496/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:17401756/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:23330645/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:3847546/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:29323445/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:11991154/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:11986065/67‑1 GGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGACTGCTCAATTATAATTTCAGCG < 1:2554905/67‑1 GGTTATATTCCTCCTGAGTTAAGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCG < 1:19685035/67‑1 AGGCATCATCCGCCAGCAGATTCATACCGGCGACAGAAGCCGTATTCAGCCCCATACTGGCGAGTTGCGCGCGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/4535315‑4535241‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcgcgtgGTTATATTCCTCCTGAGTTATGGGATCCCGGTATTAATGCCGGATTGCTCAATTATAATTTCAGCGG > CP009273/4535424‑4535490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |