| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4538708 | 350 (0.970) | 7 (0.020) | 3/94 | NT | 2.5% | coding (84/903 nt) | fimH | minor component of type 1 fimbriae |
| ? | CP009273 | = 4538723 | 255 (0.840) | coding (99/903 nt) | fimH | minor component of type 1 fimbriae | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 159 total aligned reads displayed.
GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4538634‑4538708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccaatAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < CP009273/4538723‑4538657 GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAA > 1:14091243/1‑67 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCG < 1:10641006/68‑1 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCG < 1:16346037/68‑1 TATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCG < 1:18698480/68‑1 ATTAACCTGTTTGCTGTAATGCTGATGGGCTGGTCTGTAAATGCCTGGTCATTCGCATTTAAAACAGC < 1:12213428/68‑1 ttCCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA < 1:20330395/66‑1 TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA < 1:11673184/68‑1 TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA > 1:17745021/1‑68 TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA > 1:18600615/1‑68 TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA < 1:4176303/68‑1 TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA > 1:22932818/1‑68 TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA > 1:2580281/1‑68 TACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCA < 1:8471095/68‑1 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:7459158/1‑68 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:10939091/1‑68 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:26406425/1‑68 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:26876241/1‑68 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:27650187/1‑68 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:459407/1‑68 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:5725415/1‑68 ACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAA > 1:7111760/1‑68 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT > 1:27092485/1‑68 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT < 1:5590744/68‑1 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT > 1:18021615/1‑68 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT > 1:23248486/1‑68 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT > 1:14464205/1‑68 CCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT > 1:15785335/1‑68 CCCTGGTTGCTGTACTGCTGATGGGCTCGTCGTTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT > 1:4501533/1‑68 TGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAATcgt > 1:28828841/1‑65 CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATG > 1:3210207/1‑67 CCTGGTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGGTTTACAGGCGAATG > 1:18081221/1‑67 GTCATTCGCCTGTAAAACCGCCAATAGGGGTAGCGGTACCATTGGCGGTTTTACAGGCGAATGCCCAG > 1:16351917/1‑68 GTCATTCGCCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGCCCAG > 1:17671067/1‑68 CCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTA > 1:17427200/1‑67 CCTGTAAAACCGCCAATAGGGATAGCGGTACCATTGGAGGTTTTACAGGCGAATGACCAGGCATTTA > 1:386813/1‑67 AACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCA > 1:2825411/1‑67 ACCGCCTATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACAGACGAGC < 1:25616820/68‑1 ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC < 1:5037022/68‑1 ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC < 1:21830647/68‑1 ACCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGC < 1:16669779/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCa < 1:8115064/68‑2 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:11753589/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:14719503/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:8839073/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:27857263/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:28452374/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:7834341/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:29051514/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:1269168/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:3315453/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:6692767/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:3446572/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:6484035/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:5899640/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:4891475/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:9270695/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:24105881/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:2196950/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:25453415/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:15097123/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:20001498/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:19613004/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:10112892/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:24218931/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:1614072/68‑1 CCGCCAATAGGGATAGCGGTACCATTGGAGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCC < 1:6809951/68‑1 CCGCCAATAGGGATAGCGGTACCATTGCCGGTTTTACAGGCGAATGACCAGGCTTTTACCGACCAGCC < 1:8388201/68‑1 CGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCC > 1:18744727/1‑68 CGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCC > 1:11236836/1‑68 CGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCC > 1:2942815/1‑68 CGCCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCC > 1:25173973/1‑68 CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA > 1:19025618/1‑67 CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA > 1:20734604/1‑67 CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA > 1:21349543/1‑67 CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA > 1:22263766/1‑67 CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA > 1:29205982/1‑67 CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCA > 1:13575945/1‑67 CCAATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGACCA > 1:18920115/1‑67 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:29839293/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:14560274/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:26487914/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:15549737/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:1359967/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:11927300/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:12073915/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:22778893/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:12821110/68‑1 AATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA < 1:13264670/68‑1 ATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA > 1:6413965/1‑67 ATAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCA > 1:8444632/1‑67 TAGTGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < 1:9004336/68‑1 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCCGCCCATCAGC > 1:27384387/1‑68 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < 1:19243585/68‑1 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC > 1:14957335/1‑68 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < 1:769581/68‑1 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC > 1:15305209/1‑68 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC > 1:2973080/1‑68 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < 1:25147571/68‑1 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < 1:21343589/68‑1 TAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC > 1:16701712/1‑68 GTTATTACCCTGTTTGCTGTACTGCTGATGGGCTGGTCGGTAAATGCCTGGTCATTCGCCTGTAAAACCGCCAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/4538634‑4538708‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgccaatAGGGATAGCGGTACCATTGGCGGTTTTACAGGCGAATGACCAGGCATTTACCGACCAGCCCATCAGC < CP009273/4538723‑4538657 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |