| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 442683 | 278 (0.770) | 27 (0.090) | 12/90 | NT | 8.5% | coding (479/891 nt) | cyoE | protoheme IX farnesyltransferase |
| ? | CP009273 | = 442722 | 357 (1.230) | coding (440/891 nt) | cyoE | protoheme IX farnesyltransferase | |||||
Only 100 of 607 total aligned reads displayed.
AATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAA > CP009273/442616‑442749 | tagcctgtacctgaaacgccactctgtctacggcacgttgattggttcgctctccggCGCTGcgccgc > 1:9183002‑M1/58‑68 (MQ=255) aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt < 1:9757598/68‑1 (MQ=255) aTGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt < 1:26131251/68‑1 (MQ=255) aTGGCGATGGCATAGGAGAGACGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCt < 1:16773028/68‑1 (MQ=255) ggCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTAt < 1:27886117/68‑1 (MQ=255) gCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCcggt > 1:3205308‑M1/1‑64 (MQ=255) gCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATc > 1:18254244/1‑68 (MQ=255) gATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGa < 1:15084944/68‑1 (MQ=255) tGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGaa < 1:7018859/67‑1 (MQ=255) atgaaacgccactctgtctacggcacgttgattggttagctctccggCGCTGCGCCGCGAGCGAacg < 1:13243250‑M1/20‑2 (MQ=255) aTAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCa < 1:19145140/67‑1 (MQ=255) aTAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCAc < 1:555608/68‑1 (MQ=255) gAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgct > 1:15482103/1‑66 (MQ=255) gAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGt > 1:14419316/1‑68 (MQ=255) gAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGt > 1:1190460/1‑68 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCgg < 1:3465202/66‑1 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt > 1:6048940/1‑68 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt > 1:14130117/1‑68 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt > 1:21209839/1‑68 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCGATCGAACTCACCGGtt > 1:4228584/1‑68 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGATGCGCCGCTATAGAACTCCCCgggt > 1:672734/1‑66 (MQ=255) aGTGAGGCATCTGCCACAGGCTGAAGATAGCAAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt > 1:1725171/1‑68 (MQ=255) gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt < 1:18689661/67‑1 (MQ=255) gTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGtt < 1:26730494/67‑1 (MQ=255) gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc < 1:29301127/68‑1 (MQ=255) gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc > 1:28963722/1‑68 (MQ=255) gAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTAcc < 1:7165322/68‑1 (MQ=255) ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGACCTCACCGGTTACCGc > 1:17753409/1‑68 (MQ=255) ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc > 1:3037649/1‑68 (MQ=255) ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc > 1:20175502/1‑68 (MQ=255) ggCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc > 1:10587492/1‑68 (MQ=255) gCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc > 1:18486871/1‑67 (MQ=255) cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcac > 1:23464947/1‑68 (MQ=255) cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGcac > 1:10026763/1‑68 (MQ=255) cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGca < 1:10285984/67‑1 (MQ=255) cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGca < 1:6542196/67‑1 (MQ=255) cATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGc < 1:5195388/66‑1 (MQ=255) cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGATCTCACCGGTTAGCGCACAGt < 1:8178659/68‑1 (MQ=255) cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt < 1:28820118/68‑1 (MQ=255) cTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGt < 1:16518307/68‑1 (MQ=255) tGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa < 1:27135375/68‑1 (MQ=255) gCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTa > 1:22289602/1‑67 (MQ=255) ccACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAg > 1:8737814/1‑67 (MQ=255) gcacgttgattggttcgctctccggCGCTGCGCCGGTATCGAGCGCGCCGGTTACCGCACAGTAGCCg < 1:27324422‑M1/43‑1 (MQ=255) gcacgttgattggttcgctctccggCGCTGCGCCGCTATCGGACTCACCGGTTTCCGGACAGTAGCCg < 1:2623124‑M1/43‑1 (MQ=255) gcacgttgattggttcgctctccggCGCTGCGCCGCTATCGCTCTCCCGGGGTACCGCGCAGTAGCCg < 1:11803488‑M1/43‑1 (MQ=255) acaGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCg > 1:19505038/1‑68 (MQ=255) gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATc > 1:17579819/1‑67 (MQ=255) gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATc > 1:27432391/1‑67 (MQ=255) gCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATc > 1:24931434/1‑67 (MQ=255) cTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCa > 1:16131138/1‑67 (MQ=255) aGATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggttaccggtgagttcgatagc > 1:1579385‑M1/1‑27 (MQ=255) gATAGCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcg > 1:11353072‑M1/1‑26 (MQ=255) gATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg < 1:22655613‑M2/68‑4 (MQ=255) aTAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg < 1:14531054‑M2/67‑4 (MQ=255) aTAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcg < 1:22019172‑M2/67‑4 (MQ=255) ttcgctctccggCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTTGCCGATCACCggcggc < 1:11476379‑M1/55‑1 (MQ=255) gCCAGCAGGATCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcg > 1:11082949‑M1/1‑22 (MQ=255) gCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgc < 1:3961829‑M2/68‑8 (MQ=255) ccagcATCGCTCCGCCGCTATCGAACTCACCGGTTACCGCACAGTACCCGATCCCCGgcggcgcagcg > 1:25756932‑M2/2‑57 (MQ=255) cagGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcg < 1:20594531‑M2/67‑12 (MQ=255) agGATCGCTTCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACAGGCGGCGCAGCGcc > 1:3815050/1‑68 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:12122106‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:19589630‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:14262549‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagc > 1:21902732‑M2/1‑55 (MQ=255) agGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAgcgc < 1:8307397/67‑1 (MQ=255) gATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCgg > 1:7660730/1‑68 (MQ=255) aTCGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgat > 1:23226964‑M1/1‑13 (MQ=255) aTCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGcc < 1:21438350/65‑1 (MQ=255) tCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgag < 1:20052504/68‑1 (MQ=255) cGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcct > 1:12415200‑M1/1‑11 (MQ=255) cGCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcct > 1:24838223‑M1/1‑11 (MQ=255) CGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGgaga > 1:10414303‑M1/1‑68 (MQ=255) gCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcct > 1:21633418‑M1/1‑10 (MQ=255) gCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcct > 1:6666057‑M1/1‑10 (MQ=255) gCTGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcct > 1:19698850‑M1/1‑10 (MQ=255) tGCGCCGCcggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctg > 1:8044603‑M1/1‑8 (MQ=255) TGCGCCGCTATCGAACTCCCCGGTTTCCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCg < 1:4982157‑M1/68‑1 (MQ=255) TGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCg < 1:24472110‑M1/68‑1 (MQ=255) gcgcCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggc > 1:19053670‑M2/1‑46 (MQ=255) gcgcCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggc > 1:12764014‑M2/1‑46 (MQ=255) gcgcCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggc > 1:2773019‑M2/1‑46 (MQ=255) gcgcCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggc > 1:26488199‑M2/1‑46 (MQ=255) GCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGa > 1:22907478‑M1/1‑68 (MQ=255) gccgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggcta > 1:25518587‑M1/1‑5 (MQ=255) gccgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggcta > 1:13437970‑M1/1‑5 (MQ=255) gccgcTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggcta < 1:28076669‑M2/68‑25 (MQ=255) GCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGaa < 1:17935664‑M1/67‑1 (MQ=255) cgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggctatc < 1:20846601‑M1/68‑66 (MQ=255) cgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggctatc < 1:18948023‑M1/68‑66 (MQ=255) cgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggctatc < 1:25326906‑M1/68‑66 (MQ=255) cgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggctatc < 1:28523147‑M1/68‑66 (MQ=255) cgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggctatc < 1:28320627‑M1/68‑66 (MQ=255) cgccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggctat < 1:29625521‑M1/67‑65 (MQ=255) cgcTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggctatc > 1:23758006‑M2/1‑42 (MQ=255) cgcTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggctatc > 1:12651693‑M2/1‑42 (MQ=255) cgcTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGgcggcgcagcgatcctgctggctatc > 1:13499973‑M2/1‑42 (MQ=255) gccggtgatcggctactgtgcggtaaccggtgagttcgatagcggcgcagcgatcctgctggctatct < 1:1084244‑M1/68‑67 (MQ=255) gccggtgatcggctactgtgcggtaaacggtgagttcgatagcggcgcagcgatcctgctggctatct < 1:16289735‑M1/68‑67 (MQ=255) | AATGGCGATGGCATAGGAGTGAGGCATCTGCCACAGGCTGAAGATAGCCAGCAGGATCGCTGCGCCGCTATCGAACTCACCGGTTACCGCACAGTAGCCGATCACCGGCGGCGCAGCGCCGGAGAGCGAACCAA > CP009273/442616‑442749 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |