| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 730100 | 49 (0.140) | 3 (0.010) | 3/104 | NT | 6.2% | pseudogene (512/1521 nt) | rhsO | pseudogene, Rhs family protein |
| ? | CP009273 | = 730150 | NA (NA) | pseudogene (562/1521 nt) | rhsO | pseudogene, Rhs family protein | |||||
Only 100 of 141 total aligned reads displayed.
ACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGT > CP009273/730033‑730167 | aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCCCCGG > 1:5018022‑M1/1‑68 (MQ=255)aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGG > 1:22413688‑M1/1‑68 (MQ=255)aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGG > 1:17199502‑M1/1‑68 (MQ=255)aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGG > 1:14175748‑M1/1‑68 (MQ=255)aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGG > 1:20509657‑M1/1‑68 (MQ=255)aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGG > 1:21046207‑M1/1‑68 (MQ=255)aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGG > 1:22068009‑M1/1‑68 (MQ=255)aCCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGCTTGAAACCGCCACCGG > 1:23950910‑M1/1‑68 (MQ=255) catcaGGGTTGAAACCGCCACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgcc > 1:20201560‑M1/1‑24 (MQ=255) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCTCAGCCTGGCGGAGACCATTCAGCACTCcggcg > 1:307718/1‑68 (MQ=11) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:10069345/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:20344375/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:24483149/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:26326544/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:26394365/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:22756308/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:3579322/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:10208936/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:5134899/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:8014902/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:771095/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:9113985/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:10759765/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:1045942/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:13128206/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:64760/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:630296/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:6165605/1‑68 (MQ=33) aaCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggc < 1:24345165/67‑1 (MQ=31) aaCCGCCACCGGTGAGATGCCGAAAACGCAGCGCCGCAGACTGGCGGATACCCTTCAGCAGTCaggcg > 1:8971978/1‑68 (MQ=11) aCCGCCACCGGTGAGCTGGCGAGAACGCAGCGCCGCAGCCTGGCGGATACCCCTCAGCAGTCcggcg > 1:20114813/1‑67 (MQ=11) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcgg < 1:17484372/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcgg < 1:26310289/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcgg < 1:27420782/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcgg < 1:1294403/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcgg < 1:24312015/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcgg < 1:16112524/68‑1 (MQ=35) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:1780695/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:27225345/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:12129061/1‑67 (MQ=33) aCCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCcggcg > 1:7100870/1‑67 (MQ=33) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCggcggc > 1:15114637/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCggcggc > 1:2167977/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCggcggc < 1:18895980/68‑1 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCggcggc > 1:24850202/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCggcggc > 1:1844509/1‑68 (MQ=35) ccGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGAAGCCTGGCGGATACCCTTCAGCAGTCCggcggc > 1:22801192/1‑68 (MQ=25) gCCACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcgg < 1:27196493‑M1/68‑61 (MQ=255) cccccggactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:1171411‑M1/4‑7 (MQ=255) cccccggactgctgaagggtatccgccaggctgcggcgctgcgttttccccagctcaccggtggcggt > 1:9601773‑M1/4‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:18868009‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:8480799‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:2448479‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:13542428‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:6847107‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:12116888‑M1/1‑7 (MQ=255) ccACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt > 1:719772‑M1/1‑7 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:14427201‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:14745008‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:28069771‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:3762518‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:312509‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:22111523‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:28326950‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:16748659‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:8559327‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:9291863‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt < 1:11209919‑M1/68‑63 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt < 1:21029569‑M1/67‑62 (MQ=255) cACCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggt < 1:25674371‑M1/67‑62 (MQ=255) aCCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggttt < 1:1689100‑M1/68‑64 (MQ=255) aCCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggttt < 1:28186216‑M1/68‑64 (MQ=255) aCCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt > 1:17823559‑M1/1‑5 (MQ=255) aCCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt > 1:23819660‑M1/1‑5 (MQ=255) aCCGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtt > 1:11315747‑M1/1‑5 (MQ=255) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAg > 1:16335706/1‑67 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:2241590/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:4562212/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:11322929/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:28882908/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:17876339/68‑1 (MQ=35) aCCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGa < 1:28210059/68‑1 (MQ=35) cGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttca < 1:18855882‑M1/68‑66 (MQ=255) cGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttca < 1:15301643‑M1/68‑66 (MQ=255) cGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttca < 1:15243334‑M1/68‑66 (MQ=255) cGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttca < 1:15602953‑M1/68‑66 (MQ=255) cGGactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttca < 1:22100804‑M1/68‑66 (MQ=255) cGGTGCGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg > 1:21697107/1‑68 (MQ=25) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:7874732/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:29188033/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:4169770/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:3664084/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:27751687/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:17552680/68‑1 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg > 1:1848136/1‑68 (MQ=35) cGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACg < 1:2288762/68‑1 (MQ=35) cGGGGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGGCCGGCGGCGAAGACg < 1:6604461/68‑1 (MQ=255) ggTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACgg > 1:19798410/1‑68 (MQ=35) ggTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACgg > 1:9849011/1‑68 (MQ=35) gactgctgaagggtatccgccaggctgcggcgctgcgttttcgccagctcaccggtggcggtttcaac < 1:24276305‑M1/68‑68 (MQ=255) | ACCCGCATCCAGACGATTTATCAGCCGGGGAGCTTCACGCCACTCATCAGGGTTGAAACCGCCACCGGTGAGCTGGCGAAAACGCAGCGCCGCAGCCTGGCGGATACCCTTCAGCAGTCCGGCGGCGAAGACGGT > CP009273/730033‑730167 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |