| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 921364 = | 53 (0.150) | 16 (0.050) | 6/100 | NT | 25.3% | noncoding (64/88 nt) | serW | tRNA‑Ser |
| ? | CP009273 | 1092768 = | NA (NA) | intergenic (+483/+253) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
Only 100 of 259 total aligned reads displayed.
CGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > CP009273/921297‑921431 | aaataagacctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:11737008‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:20502996‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:3213794‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:6647968‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:16420170‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:23225770‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:25848756‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:24062087‑M1/68‑68 (MQ=255)aaagaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagc > 1:13416929‑M1/68‑68 (MQ=255) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:15352242/68‑1 (MQ=40) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:19794087/68‑1 (MQ=40) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:3572929/68‑1 (MQ=40) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:16007916/68‑1 (MQ=40) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:25743784/68‑1 (MQ=40) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGGAGGGGGGGATTCGAAccc < 1:28469215/68‑1 (MQ=255) gAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTC‑TTAAATATGGCGGTGAGGGGGGGATTCGAAccc < 1:8753283/67‑1 (MQ=255) aagaagagctcgtacgaaagtacgggcttttttttcgtttattgcacacaccggggggatgagaagcc > 1:9171114‑M1/67‑68 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccc > 1:12692828‑M1/66‑68 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccc > 1:12635542‑M1/66‑68 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc < 1:29641265‑M1/2‑1 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc < 1:5521540‑M1/2‑1 (MQ=255) agaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcc < 1:22650871‑M1/2‑1 (MQ=255) aaaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:29706058/68‑1 (MQ=40) aaaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:18239775/68‑1 (MQ=40) gaagagctcgtacgaaagtacggggttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:4679770‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcttatattgcacacacctgggggatgagaagcccc < 1:26596875‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtttattgcacacaccgggtggaagagaagaccc < 1:2915223‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacaccggggggggatgagcagcacc < 1:15529000‑M1/4‑4 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgcgcagcccc < 1:27829038‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagccgc < 1:5924526‑M1/4‑3 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:23577321‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:10126117‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:27974464‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:4431017‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:4620394‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:25203954‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:21044000‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:29346756‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:2576861‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:10864057‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:8619656‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:13123328‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:7590016‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:13512316‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:13775082‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:7249941‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:11155521‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:7073518‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:6939768‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:6876566‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:6512804‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:105745‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:18564995‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:19022836‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:20186215‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:19931251‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:5152668‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcaca < 1:22718950‑M1/4‑4 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatcagaaccccc < 1:27788086‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggaggagaaccccc < 1:16194872‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggaagagaaccccc < 1:29671465‑M1/4‑1 (MQ=255) gaagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaacgggggtatgagaagcccc < 1:18550928‑M1/4‑1 (MQ=255) aaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAccccc < 1:19382194/68‑1 (MQ=40) aaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:791402/67‑1 (MQ=40) aaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:9705831/67‑1 (MQ=40) aaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:16391680/67‑1 (MQ=40) aaaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAAcccc < 1:25565962/67‑1 (MQ=40) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagcccc < 1:8994328‑M1/4‑1 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg < 1:16827231‑M1/5‑1 (MQ=255) aagagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggagcagcagCCCCg < 1:13994429‑M1/5‑1 (MQ=255) aaaaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCg < 1:8397274/68‑1 (MQ=40) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg < 1:18406565‑M1/5‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCg < 1:24297369‑M1/5‑1 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGa > 1:17469492‑M1/63‑68 (MQ=255) agagctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGa > 1:26276895‑M1/63‑68 (MQ=255) aaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt < 1:21894252/68‑1 (MQ=40) aaaaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGAt < 1:10515216/68‑1 (MQ=40) gctcgtacgaaagtacgggcttttttttcgtatattgcacacaccggggggatgagaagCCCCGAt > 1:24919067‑M1/60‑66 (MQ=255) aaGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATAc < 1:17880396/68‑1 (MQ=40) aGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACg > 1:22322344/1‑68 (MQ=40) tCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGt < 1:10226037/66‑1 (MQ=37) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:5466719/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:12287482/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:13166810/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:11991936/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:699993/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:15928571/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:11358192/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:27775210/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:19974161/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:20714779/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:21306605/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:24542871/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:28974043/68‑1 (MQ=35) cGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:26751576/68‑1 (MQ=35) gCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGc < 1:4923996/67‑1 (MQ=33) ccgaaagtacgggcttttttttcgtatattgcccacaccggggggatgagaagCCCCGATACGTTGc > 1:27057628‑M1/54‑67 (MQ=255) cgaaagtacgggcttttttttcgtatattgcacaccccgggggcatgagaagCCCCGATACGTTGCCg > 1:21695615‑M1/53‑68 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt < 1:1516975‑M1/68‑1 (MQ=255) CCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAt > 1:28178500‑M1/1‑68 (MQ=255) | CGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAAT > CP009273/921297‑921431 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |