| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1161581 | 193 (0.540) | 27 (0.100) | 12/82 | NT | 18.8% | coding (41/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase |
| ? | CP009273 | 1162077 = | 92 (0.350) | coding (537/1305 nt) | ndh | respiratory NADH dehydrogenase 2/cupric reductase | |||||
Only 100 of 320 total aligned reads displayed.
TGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCAAAA > CP009273/1161515‑1161646 | tGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt < 1:34951/68‑1 (MQ=255)tGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt < 1:14581148/68‑1 (MQ=255) gTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:22851929/1‑66 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:14207354/1‑65 (MQ=255) ttAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGt > 1:28791775/1‑65 (MQ=255) tAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTgg < 1:16078738/68‑1 (MQ=255) aGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaa > 1:5920465/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGggcgccgggtgttgaac > 1:20598198‑M1/1‑51 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGcgcgacgggtgtaga > 1:29559514‑M1/1‑51 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:2068658/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:5261905/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:14940773/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGaaa > 1:1653265/1‑68 (MQ=255) gggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCGGGTGGGGTCGaaa > 1:23923767/1‑68 (MQ=39) ggggTGACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGTTGGGCTGGAAAt > 1:21396844/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGggcgagtggtgttgaaat > 1:7127673‑M1/1‑50 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGggcgacgggtgta > 1:14054565‑M1/1‑50 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGcgcggcgggtctagaaca > 1:18036467‑M1/1‑50 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGcgcgacgggtgtagaaa > 1:1634590‑M1/1‑50 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:22713403/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:24807336/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:2742448/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAAt > 1:794275/1‑68 (MQ=255) ggggTCACGTTGACTACGCCATTGAAAAAGATTGGGATTGTCGGCGGCGGagcgacgggtgtagaac > 1:4441182‑M1/1‑50 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGcgcgccgggtgtagaaatctccgctg > 1:23795760‑M1/1‑42 (MQ=255) gTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAacac > 1:3002105/1‑68 (MQ=255) ttGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:29352560/1‑68 (MQ=255) ttGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:27159558/1‑68 (MQ=255) gACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGc < 1:1234141/68‑1 (MQ=255) gACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGc < 1:9372398/68‑1 (MQ=255) ccTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:24285620/2‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGagcgacgggtgtagaactctccgctgattt > 1:7813654‑M1/1‑38 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:3251873/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:7371434/1‑65 (MQ=255) aCTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAAcaca > 1:5124450/1‑65 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGcgcgacgggtgtagaactctccgctgaagt > 1:2307052‑M1/1‑37 (MQ=255) cTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCt < 1:21839182/67‑1 (MQ=255) cTACGCCATTGAAAAAGATTCTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTg > 1:9040792/1‑68 (MQ=255) tACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgg > 1:19094256/1‑68 (MQ=255) tACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgg > 1:26197584/1‑68 (MQ=255) tACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgg > 1:4754350/1‑68 (MQ=255) tACGCCATTGAAAAAGATTGAGTTTTTCAGCGGCGGAGCGGGGGGGCTAGAAAAGGCCACTGAGCTga > 1:18426252/1‑67 (MQ=255) cGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:28241222/68‑1 (MQ=255) cGCCATTGAAAAAGAATGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTgggg < 1:26628644/68‑1 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTTCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:19772679/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:27829877/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:10799304/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:25692838/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:22651008/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:22213320/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:151159/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:17203469/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:551968/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:19459899/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:19273748/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGTCCTGGTGGGCTGGAATTGGCAACACAGCACGGGCa > 1:10904816/1‑68 (MQ=38) ccATTGAAAAAGATTGTGATTGTCGGCGGCGGAGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:26925684/1‑68 (MQ=255) ccATTGAAAAAGATTGTGATTCTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCa > 1:26962983/1‑68 (MQ=255) tGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAg < 1:18769909/68‑1 (MQ=255) aaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:19043488/1‑68 (MQ=255) aaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:18960368/1‑68 (MQ=255) aaGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:377305/1‑68 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:27662525/1‑67 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:15641746/1‑67 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:4633444/1‑67 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:12653442/1‑67 (MQ=255) aGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTggg > 1:19945661/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:9698468/1‑67 (MQ=255) attgtgattgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:15707105/1‑67 (MQ=255) attgtgattgtCAGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGAc > 1:24552759/1‑67 (MQ=255) gtgattgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaact < 1:9209941‑M1/68‑52 (MQ=255) gattgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgc > 1:273045‑M1/1‑15 (MQ=255) gattgtCGGCGGCGGcgcgacgcgtgtagaactctccgctgaattgcacaacgcggtcaagcaactgc < 1:20083045‑M1/68‑54 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaa > 1:4149599/1‑68 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaa > 1:7610850/1‑68 (MQ=255) attgtCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaa > 1:11163524/1‑68 (MQ=255) tgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca < 1:2332803‑M1/68‑57 (MQ=255) tgtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcaca < 1:1329027‑M1/68‑57 (MQ=255) gtCGGCGGCGGcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacag < 1:12940619‑M1/68‑58 (MQ=255) tCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaaaaaa > 1:6935282/1‑68 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaacttcacagc < 1:11844319‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:25180290‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:24118663‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:10064078‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:17490867‑M1/67‑59 (MQ=255) cggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagc < 1:13197964‑M1/67‑59 (MQ=255) cggcggcggTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGaaaaaa < 1:7310331/67‑1 (MQ=255) ggcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagcta < 1:25329138‑M1/68‑61 (MQ=255) gcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctac > 1:10377403‑M1/1‑7 (MQ=255) gcggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctac > 1:8076049‑M1/1‑7 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacgg < 1:20358965‑M1/68‑64 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacgg < 1:20859977‑M1/68‑64 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:16732004‑M1/67‑63 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:17013402‑M1/67‑63 (MQ=255) ggcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacg < 1:3363057‑M1/67‑63 (MQ=255) gcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggt > 1:1540531‑M1/1‑4 (MQ=255) gcggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggt > 1:26426950‑M1/1‑4 (MQ=255) cggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggt < 1:6594408‑M1/67‑65 (MQ=255) ggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtctagcaactgcacagctacggtt < 1:11561651‑M1/67‑66 (MQ=255) ggcgcgacgggtgtagaactctccgctgaattgcacaacgcggtcaagcaactgcacagctacggtt < 1:10733941‑M1/67‑66 (MQ=255) | TGGTTAATAAATTTAAGGGGGTCACGTTGACTACGCCATTGAAAAAGATTGTGATTGTCGGCGGCGGTGCTGGTGGGCTGGAAATGGCAACACAGCTGGGGCATAAGCTGGGACGCAAGAAAAAAGCCAAAA > CP009273/1161515‑1161646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |