| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1483947 | NA (NA) | 4 (0.010) | 3/94 | NT | NA | noncoding (8/22 nt) | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 1483953 | NA (NA) | noncoding (14/22 nt) | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 523 total aligned reads displayed.
ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGAC > CP009273/1483879‑1484014 | tGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGG > 1:7212841‑M1/1‑68 (MQ=255) ggCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGt < 1:14553951/68‑1 (MQ=255) gCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGtt > 1:23380988/1‑68 (MQ=255) cTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGttt > 1:29294227/1‑68 (MQ=255) cTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGttt > 1:18061311/1‑68 (MQ=255) aTGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTc > 1:3250145‑M2/1‑66 (MQ=255) tGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcc < 1:10774012‑M2/67‑3 (MQ=255) atatCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctcc < 1:2871884‑M2/67‑6 (MQ=255) tatCTGCAGACGCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGGTTTTTcctccgc > 1:4411182‑M2/1‑61 (MQ=255) tatCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctccg < 1:2069612‑M2/67‑7 (MQ=255) tatCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctccg < 1:28333538‑M2/67‑7 (MQ=255) tGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGGTTTTTCCTCCGCCtgt < 1:23955986/68‑1 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGTGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:16022450/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:12268350/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:27814696/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:20099599/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:24930635/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:28368136/1‑67 (MQ=255) gCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCtgt > 1:16700387/1‑67 (MQ=255) aGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTgc > 1:26535374/1‑67 (MQ=255) aCCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:4121206/1‑68 (MQ=255) aCCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:7793340/1‑68 (MQ=255) aCCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:11582419/1‑68 (MQ=255) aCCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:2955159/1‑68 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg < 1:21712400/67‑1 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg < 1:14027813/67‑1 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:4842050/1‑67 (MQ=255) cccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGcgcg > 1:13539021/1‑67 (MQ=255) ccAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTc > 1:17492727/1‑68 (MQ=255) gtggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGaaaaaacctccgcctctttcactcatta > 1:17771109‑M1/1‑40 (MQ=255) gtggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCagag > 1:15490361/1‑68 (MQ=255) gtggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCagag > 1:2609644/1‑68 (MQ=255) gtggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCagag > 1:22007586/1‑68 (MQ=255) gtggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCagag > 1:5264592/1‑68 (MQ=255) gtggaTTATTTACAGTCTTAATGAGTGAGAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCagag > 1:21363495/1‑68 (MQ=255) tggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCaga < 1:15798453/66‑1 (MQ=255) ggtTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGtt > 1:13737224/1‑68 (MQ=255) tttatttaCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTa > 1:1872713/1‑68 (MQ=255) ttatttaCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTcctccgcctctttcactcattaagac > 1:25690947‑M2/1‑41 (MQ=255) ttaCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGaa > 1:6982595/1‑68 (MQ=255) ttaCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGaa > 1:10010074/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:19673979/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:25462871/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:8777516/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:17594256/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:14179717/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:24775691/1‑68 (MQ=255) taCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAt > 1:11048720/1‑68 (MQ=255) aCAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtt < 1:15146858/68‑1 (MQ=255) aGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtttt > 1:6785460/1‑68 (MQ=255) tCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTc > 1:1005414/1‑68 (MQ=255) tCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTc > 1:7932439/1‑68 (MQ=255) cTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAAtttt < 1:3817801/65‑1 (MQ=255) tAATGAGGGAAAGCGGCGGAGGTTTTTTcctccgcctctttcactcattaagactgtaaataaaccac > 1:8304015‑M2/1‑28 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:23109080/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:10374092/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:11305293/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:9407390/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:28083696/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:12615214/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt < 1:27468193/68‑1 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:9301249/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:3114872/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:18357514/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:6259542/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:19389121/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:22373861/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:22641747/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:24342877/1‑68 (MQ=255) tGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGt > 1:354666/1‑68 (MQ=255) aGTGAAGGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc > 1:4242382/1‑68 (MQ=255) aGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc > 1:9750514/1‑68 (MQ=255) aGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGc > 1:26313376/1‑68 (MQ=255) tGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGa > 1:2690865/1‑68 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCg < 1:12073768/66‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCg < 1:1477040/66‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCg < 1:18264800/66‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCg < 1:22270287/66‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCg < 1:20959614/66‑1 (MQ=255) gAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGGCAGAGTTTAGCGAATTTTTCGAGGGTGCg < 1:18973973/66‑1 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:10592313/1‑68 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:13222225/1‑68 (MQ=255) agagGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:17081565/1‑68 (MQ=255) agGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:236848/1‑66 (MQ=255) agGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:17230559/1‑66 (MQ=255) ggCGGAGGTTTTTTCCTCCGCCTGTGCGCTTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGc < 1:567773/67‑1 (MQ=255) ggCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGc < 1:28965116/67‑1 (MQ=255) ggCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGc < 1:7423321/67‑1 (MQ=255) gCGGAGGaaaaaacctccgcctctttcactcattaagactgtaaataaaccacctgggtctgcagata > 1:967447‑M1/1‑7 (MQ=255) gCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:24546470/1‑64 (MQ=255) gCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATaa > 1:8458899/1‑64 (MQ=255) cGGAGGaaaaaacctccgcctctttcactcattaagactgtaaataaaccacctgggtctgcagata < 1:16867991‑M1/67‑62 (MQ=255) cGGAGGaaaaaacctccgcctctttcactcattaagactgtaaataaaccacctgggtctgcagata < 1:24020744‑M1/67‑62 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:15046311/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:1292296/67‑1 (MQ=255) ggAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgt < 1:6060973/67‑1 (MQ=255) ggTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCtgtgtg > 1:6560852/1‑67 (MQ=255) gaaaaaacctccgcctctttcactcattaagactgtaaataaaccacctgggtctgcagatattcat > 1:23876013‑M1/1‑1 (MQ=255) gaaaaaacctccgcctctttcactcattaagactgtaaataaaccacctgggtctgcagatattcat > 1:20559095‑M1/1‑1 (MQ=255) gaaaaaacctccgcctctttcactcattaagactgtaaataaaccacctggg < 1:24277423‑M1/52‑52 (MQ=255) | ATGGCTTGCATGAATATCTGCAGACCCAGGTGGTTTATTTACAGTCTTAATGAGTGAAAGAGGCGGAGGTTTTTTCCTCCGCCTGTGCGCGTCAGAGTTTAGCGAATTTTTCGAGGGTGCGAATAAGCTGTGTGAC > CP009273/1483879‑1484014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |