New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 1986176228 (0.630)12 (0.040) 6/96 NT 5.1% coding (123/549 nt) pgsA phosphatidylglycerophosphate synthetase
?CP009273 = 1986190 250 (0.810)coding (109/549 nt) pgsA phosphatidylglycerophosphate synthetase

Only 100 of 380 total aligned reads displayed.

CACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGA  >  CP009273/1986109‑1986243
                                                                   |                                                                   
cACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCG                                                                     >  1:15042839‑M1/1‑68 (MQ=255)
 aCCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCG                                                                     >  1:1713210‑M1/1‑67 (MQ=255)
 aCCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCG                                                                     >  1:1215761‑M1/1‑67 (MQ=255)
 aCCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCG                                                                     >  1:13048108‑M1/1‑67 (MQ=255)
      aCCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAg                                                               >  1:24422071/1‑68 (MQ=255)
       ccGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGa                                                              <  1:1069290/68‑1 (MQ=255)
       ccGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGa                                                              <  1:4985752/68‑1 (MQ=255)
         gggTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGaaa                                                            <  1:13441262/68‑1 (MQ=255)
         gggTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGaaa                                                            <  1:3916945/68‑1 (MQ=255)
         gggTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGaaa                                                            <  1:11566227/68‑1 (MQ=255)
             aCTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGCCGCAGAAAATgc                                                        >  1:21005950/1‑67 (MQ=255)
             aCTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGa                                                        >  1:23856317/1‑68 (MQ=255)
             aCTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGa                                                        >  1:7678515/1‑68 (MQ=255)
             aCTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGa                                                        >  1:3348761/1‑68 (MQ=255)
               tctGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGc                                                      <  1:19366755‑M2/68‑2 (MQ=255)
                  ggTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcg                                                   >  1:2118071‑M2/1‑64 (MQ=255)
                  ggTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcg                                                   <  1:29808747‑M2/68‑5 (MQ=255)
                  ggTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcg                                                   <  1:24611525‑M2/68‑5 (MQ=255)
                    ttCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcggc                                                 <  1:23687107‑M2/68‑7 (MQ=255)
                    ttCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcggc                                                 <  1:7587658‑M2/68‑7 (MQ=255)
                    ttCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcggc                                                 <  1:25321349‑M2/68‑7 (MQ=255)
                     tCCAGTGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcggc                                                 >  1:940409‑M2/1‑61 (MQ=255)
                     tCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGctcattttctgcgtcgcggc                                                 <  1:7917710‑M1/67‑21 (MQ=255)
                     tCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcggcg                                                <  1:28607021‑M2/68‑8 (MQ=255)
                     tCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcggc                                                 >  1:15687791‑M2/1‑61 (MQ=255)
                      ccAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcggcg                                                <  1:29388505‑M2/67‑8 (MQ=255)
                       cAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcggcggt                                              >  1:20128431‑M2/1‑59 (MQ=255)
                       cAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcggcggt                                              >  1:3280264‑M2/1‑59 (MQ=255)
                       cAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGcgcggcggt                                              >  1:18345749‑M2/1‑59 (MQ=255)
                         gcggcgTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCaa                                            >  1:18310538/1‑68 (MQ=255)
                         gcggcgTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCaa                                            >  1:5170005/1‑68 (MQ=255)
                         gcggcgTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCaa                                            >  1:381517/1‑68 (MQ=255)
                         gcggcgTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCaa                                            >  1:14744365/1‑68 (MQ=255)
                         gcggcgTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCaa                                            >  1:1534205/1‑68 (MQ=255)
                         gcggcgTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCaa                                            >  1:23204927/1‑68 (MQ=255)
                          cggcgTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCaa                                            >  1:13989517/1‑67 (MQ=255)
                           ggcgTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAAc                                          >  1:28143445/1‑68 (MQ=255)
                              gTGCCAGACAACCATCGACCCAGGCAGTCACCGCCGCGACGCAGAAAATGAGcgcggcggtgactga                                        >  1:1669744‑M2/1‑52 (MQ=255)
                              gTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGc                                       <  1:21647137/68‑1 (MQ=255)
                                  cAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAGCGGCGAcc                                   <  1:6845510/68‑1 (MQ=255)
                                  cAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGAcc                                   <  1:29067260/68‑1 (MQ=255)
                                  cAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGAcc                                   <  1:27042503/68‑1 (MQ=255)
                                  cAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGAcc                                   <  1:16152671/68‑1 (MQ=255)
                                      aatccATCGAACCTGTCAGTCACCGCCGAGACGCAGTAAATGAGCGCGGCGGCAAACGGCGACCAGGt                               <  1:3146914/65‑1 (MQ=255)
                                      aaaCCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAgg                                <  1:27351541/67‑1 (MQ=255)
                                      aaaCCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGt                               <  1:23967036/68‑1 (MQ=255)
                                       aaCCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTg                              >  1:10148769/1‑68 (MQ=255)
                                          cATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACa                           <  1:5599177/68‑1 (MQ=255)
                                            tCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAgg                         <  1:2196698/68‑1 (MQ=255)
                                             cGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGc                        <  1:7487886/68‑1 (MQ=255)
                                                aCCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGa                     >  1:3445693/1‑68 (MQ=255)
                                                aCCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGa                     <  1:20607240/68‑1 (MQ=255)
                                                aCCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGa                     <  1:11996292/68‑1 (MQ=255)
                                                 ccAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGAt                    <  1:10930991/68‑1 (MQ=255)
                                                 ccAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGAt                    <  1:20473229/68‑1 (MQ=255)
                                                 ccAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGAt                    <  1:26348723/68‑1 (MQ=255)
                                                  cagtcagtCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATa                   <  1:11201749/68‑1 (MQ=255)
                                                  cagtcagtCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATa                   <  1:17997153/68‑1 (MQ=255)
                                                  cagtcagtCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATa                   <  1:6352925/68‑1 (MQ=255)
                                                  cagtcagtCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATa                   <  1:9084042/68‑1 (MQ=255)
                                                   agtcagtcACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATaa                  >  1:21846029/1‑68 (MQ=255)
                                                     tcagtcaCCGCCGCGctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcac                 >  1:21551140‑M1/1‑15 (MQ=255)
                                                     tcagtcaCCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATaaaa                >  1:27540001/1‑68 (MQ=255)
                                                         tcaCCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGAcc            >  1:27676925/1‑68 (MQ=255)
                                                          caCCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGAcc            <  1:8018247/67‑1 (MQ=255)
                                                          caCCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGAcc            <  1:12405754/67‑1 (MQ=255)
                                                          caCCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGAcc            <  1:1679096/67‑1 (MQ=255)
                                                           aCCGCCGCGctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctg          >  1:11363809‑M1/1‑9 (MQ=255)
                                                           aCCGCCGCGctcattttctgcgtcgcggcggtgactgactggttcgatgggtttctggcacgccgctg          >  1:22285780‑M1/1‑9 (MQ=255)
                                                           aCCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCaa          >  1:9558007/1‑68 (MQ=255)
                                                            ccgccgCGctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctgg         >  1:8624644‑M1/1‑8 (MQ=255)
                                                            ccgccgCGctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctgg         >  1:18120799‑M1/1‑8 (MQ=255)
                                                            ccgccgCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAAt         >  1:7297063/1‑68 (MQ=255)
                                                            ccgccgCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAAt         <  1:8851906/68‑1 (MQ=255)
                                                            ccgccgCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAAt         <  1:10301177/68‑1 (MQ=255)
                                                            ccgccgCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAAt         <  1:1775877/68‑1 (MQ=255)
                                                            ccgccgCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAAt         <  1:19844839/68‑1 (MQ=255)
                                                            ccgccgCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAAt         <  1:20516080/68‑1 (MQ=255)
                                                            ccgccgCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAAt         <  1:23599399/68‑1 (MQ=255)
                                                            ccgccgCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAAt         >  1:2497613/1‑68 (MQ=255)
                                                            ccgccgCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAAt         <  1:25225571/68‑1 (MQ=255)
                                                             cgccgcGctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctgga        <  1:14181185‑M1/68‑62 (MQ=255)
                                                             cgccgcGctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctgga        <  1:4502485‑M1/68‑62 (MQ=255)
                                                             cgccgcGctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctgga        <  1:2429599‑M1/68‑62 (MQ=255)
                                                             cgccgcGctcattttccgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctgga        <  1:28812157‑M1/68‑62 (MQ=255)
                                                              gccgcGctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctggaa       <  1:13726026‑M1/68‑63 (MQ=255)
                                                              gccgcGctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctgga        >  1:26583449‑M1/1‑6 (MQ=255)
                                                              gccgcGctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctgga        >  1:29381868‑M1/1‑6 (MQ=255)
                                                              gccgcGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATAc       >  1:26024712/1‑68 (MQ=255)
                                                              gccgcGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATAc       <  1:8406106/68‑1 (MQ=255)
                                                              gccgcGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATAc       >  1:28540715/1‑68 (MQ=255)
                                                              gccgcGACGAAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATAc       <  1:2675073/68‑1 (MQ=255)
                                                               ccgcGctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctggaa       >  1:5290302‑M1/1‑5 (MQ=255)
                                                               ccgcGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACa      >  1:19098867/1‑68 (MQ=255)
                                                               ccgcGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACa      >  1:11410296/1‑68 (MQ=255)
                                                                cgcgctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctggaacc     <  1:6683253‑M1/68‑65 (MQ=255)
                                                                   gctcattttctgcgtcgcggcggtgactgactggttcgatggttttctggcacgccgctggaaccaga  <  1:27248748‑M1/68‑68 (MQ=255)
                                                                   gACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGa  <  1:24145950/68‑1 (MQ=255)
                                                                   gACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGa  <  1:4762349/68‑1 (MQ=255)
                                                                   gACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGa  <  1:11870590/68‑1 (MQ=255)
                                                                   |                                                                   
CACCAAACCGGGTACTCTGGTTCCAGCGGCGTGCCAGAAAACCATCGAACCAGTCAGTCACCGCCGCGACGCAGAAAATGAGCGCGGCGGCAAACGGCGACCAGGTGACAGGCAGATAAAAGACCAATACAAAGA  >  CP009273/1986109‑1986243

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.