New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2747582 =395 (1.100)21 (0.070) 6/94 NT 6.8% coding (76/291 nt) ratB UPF0125 family protein
?CP009273 2747605 = 248 (0.820)coding (53/291 nt) ratB UPF0125 family protein

Only 100 of 470 total aligned reads displayed.

AATCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTT  >  CP009273/2747516‑2747648
                                                                  |                                                                  
aaTCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctcc                                                                   <  1:6586861/68‑1 (MQ=255)
aaTCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctcc                                                                   <  1:22147840/68‑1 (MQ=255)
 aTCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCcctcct                                                                  <  1:22581631/68‑1 (MQ=255)
  agaggtttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCt                                                                  <  1:26885570‑M1/3‑1 (MQ=255)
  agaggtttacagtgccaggtaaaattgccgttgaggtggcttatgcgctacctgagaagcagtaCCTg                                                                 >  1:7652180‑M1/65‑68 (MQ=255)
   cGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGc                                                                >  1:14976615/1‑68 (MQ=255)
   cGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGc                                                                >  1:21218317/1‑68 (MQ=255)
      tatCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGc                                                             <  1:5819852/68‑1 (MQ=255)
      tatCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGc                                                             <  1:7455668/68‑1 (MQ=255)
       atCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCg                                                            >  1:9580857/1‑68 (MQ=255)
       atCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCg                                                            >  1:28199589/1‑68 (MQ=255)
       atCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCg                                                            >  1:10644866/1‑68 (MQ=255)
        tCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCg                                                            >  1:621079/1‑67 (MQ=255)
         cGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTc                                                          <  1:21963889/68‑1 (MQ=255)
         cGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTc                                                          >  1:15663026/1‑68 (MQ=255)
          ggTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTc                                                          >  1:22809166/1‑67 (MQ=255)
            tACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCAc                                                        >  1:2404880/1‑67 (MQ=255)
            tACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCAc                                                        >  1:28719500/1‑67 (MQ=255)
              cGCAAATCCAGCAAGCCACTGGCGCGAATCGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCg                                                     <  1:25853995/68‑1 (MQ=255)
               gCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTc                                                      >  1:8771069/1‑66 (MQ=255)
               gCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTc                                                      >  1:15285505/1‑66 (MQ=255)
               gCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTc                                                      >  1:26600001/1‑66 (MQ=255)
                 aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCt                                                   <  1:3615676/67‑1 (MQ=255)
                 aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg                                                  <  1:28418906/68‑1 (MQ=255)
                 aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg                                                  <  1:20981472/68‑1 (MQ=255)
                 aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg                                                  <  1:17056495/68‑1 (MQ=255)
                 aaTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg                                                  <  1:23397962/68‑1 (MQ=255)
                 aaTTCCAGCAACCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTg                                                  <  1:23556572/68‑1 (MQ=255)
                  aTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGc                                                 >  1:10993431/1‑68 (MQ=255)
                  aTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGc                                                 >  1:25689529/1‑68 (MQ=255)
                  aTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGc                                                 >  1:1125804/1‑68 (MQ=255)
                  aTTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGc                                                 >  1:12411402/1‑68 (MQ=255)
                    tCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAg                                               <  1:2506652/68‑1 (MQ=255)
                    tCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAg                                               <  1:7870392/68‑1 (MQ=255)
                     ccAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAgg                                              <  1:10053012/68‑1 (MQ=255)
                     ccAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAgg                                              <  1:6269144/68‑1 (MQ=255)
                      cAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt                                             <  1:23223466/68‑1 (MQ=255)
                      cAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt                                             <  1:11794151/68‑1 (MQ=255)
                      cAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCACGCCCTCCTGCAGCGTCACTCGCTGCAGGt                                             <  1:23896134/68‑1 (MQ=255)
                       aGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt                                             >  1:26415242/1‑67 (MQ=255)
                         cAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt                                             >  1:3890342/1‑65 (MQ=255)
                         cAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt                                             >  1:20067719/1‑65 (MQ=255)
                         cAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGt                                             >  1:4326550/1‑65 (MQ=255)
                          aaGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTa                                            <  1:8594292/65‑1 (MQ=255)
                          aaGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACt                                          <  1:4086649/67‑1 (MQ=255)
                          aaGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACt                                          <  1:3360368/67‑1 (MQ=255)
                          aaGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACt                                          <  1:10266259/67‑1 (MQ=255)
                           aGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGc                                        <  1:9101505/68‑1 (MQ=255)
                             ccACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt                                       >  1:17402747/1‑67 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTTCTGCtt                                      <  1:27790662/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:5138340/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:15805324/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:4270237/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:16419052/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:17310377/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:29468222/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:13415201/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:8270547/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:17579160/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:28536461/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:17806103/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:2832274/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:20566167/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:12072595/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:26318144/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:25279604/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCtt                                      <  1:25550384/67‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt                                       <  1:14336799/66‑1 (MQ=255)
                              cACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCt                                       <  1:6904972/66‑1 (MQ=255)
                               aCTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTtct                                    <  1:10849612/68‑1 (MQ=255)
                                 tGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCa                                  <  1:12873160/68‑1 (MQ=255)
                                     gcgAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGt                               <  1:1845529/67‑1 (MQ=255)
                                         aTAGCTTCTTCAACCGTCGCGCCCTCCTGCTGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc                          >  1:18902740/1‑68 (MQ=255)
                                         aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCATGTACTGCTTCTCAGGTAgcgc                          <  1:4778641/68‑1 (MQ=255)
                                         aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc                          <  1:3155427/68‑1 (MQ=255)
                                         aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc                          <  1:26125689/68‑1 (MQ=255)
                                         aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc                          <  1:27146244/68‑1 (MQ=255)
                                         aTAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAgcgc                          <  1:5010570/68‑1 (MQ=255)
                                              ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATaa                      >  1:29332920/1‑67 (MQ=255)
                                              ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg                     <  1:8885975/68‑1 (MQ=255)
                                              ttcttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAg                     <  1:18782988/68‑1 (MQ=255)
                                                gctacctgagaagcagtaCCTGCAGCGTCACTCGCTGGAGGTACTGCTTCTCAGGTAGCGGATAAGc                    <  1:23077187‑M1/49‑1 (MQ=255)
                                                 ttcAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGcc                   >  1:14465353/1‑67 (MQ=255)
                                                    aaCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCAcc                >  1:9677439/1‑67 (MQ=255)
                                                    aaCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCAcc                >  1:27414527/1‑67 (MQ=255)
                                                    aaCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCt               <  1:2042052/68‑1 (MQ=255)
                                                    aaCCGTCGCGCCCTCCTGCAGCGGCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCt               <  1:13951495/68‑1 (MQ=255)
                                                     aCCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTc              >  1:29832755/1‑68 (MQ=255)
                                                      tgagaagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCa             <  1:29151001‑M1/56‑1 (MQ=255)
                                                      ccGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCa             >  1:24445227/1‑68 (MQ=255)
                                                       cGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCa             >  1:1933526/1‑67 (MQ=255)
                                                       cGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGGACTGCTTCTCAGGTAGCGCATAAGCCCCCTCa             >  1:16856200/1‑67 (MQ=255)
                                                          aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg          <  1:14648294‑M1/59‑1 (MQ=255)
                                                          aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg          <  1:28961916‑M1/59‑1 (MQ=255)
                                                          aagcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACg          <  1:21358319‑M1/59‑1 (MQ=255)
                                                           agcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGc        <  1:14189786‑M1/61‑1 (MQ=255)
                                                           agcagtaCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGc        <  1:13586187‑M1/61‑1 (MQ=255)
                                                             gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCaa      >  1:5615420/1‑68 (MQ=255)
                                                             gcCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCa       <  1:548366/67‑1 (MQ=255)
                                                               cctcctGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAAtt    <  1:19065229/68‑1 (MQ=255)
                                                                  |                                                                  
AATCGATATCGGTACGCAATTCCAGCAAGCCACTGGCGCGAATAGCTTCTTCAACCGTCGCGCCCTCCTGCAGCGTCACTCGCTGCAGGTACTGCTTCTCAGGTAGCGCATAAGCCACCTCAACGGCAATTTT  >  CP009273/2747516‑2747648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.