| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2943957 = | NA (NA) | 4 (0.010) | 4/92 | NT | NA | intergenic (+25/+37) | argA/recD | fused acetylglutamate kinase homolog (inactive)/amino acid N‑acetyltransferase/exonuclease V (RecBCD complex), alpha chain |
| ? | CP009273 | 2943974 = | NA (NA) | noncoding (3/14 nt) | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 360 total aligned reads displayed.
CTACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGA > CP009273/2943890‑2944024 | cTACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACa < 1:540876/68‑1 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:21304424/1‑68 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt < 1:25534071/68‑1 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt < 1:20464704/68‑1 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:3610597/1‑68 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt < 1:15388504/68‑1 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt > 1:6146564/1‑68 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt < 1:13197400/68‑1 (MQ=255) tACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACAt < 1:29682317/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc > 1:167418/1‑68 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:3807497/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc > 1:15896579/1‑68 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:6476985/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:19209185/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:29225066/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc > 1:20007024/1‑68 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc < 1:11995395/68‑1 (MQ=255) ccAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGc > 1:11645460/1‑68 (MQ=255) cAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCg > 1:24990759/1‑68 (MQ=255) cAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCg > 1:21317357/1‑68 (MQ=255) cGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTa > 1:2379833/1‑67 (MQ=255) gTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAac < 1:16305973/68‑1 (MQ=255) gTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAac > 1:11026760/1‑68 (MQ=255) gTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAac < 1:16598117/68‑1 (MQ=255) gTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAac < 1:10164913/68‑1 (MQ=255) aaaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:9718443/67‑1 (MQ=255) aaaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:28945575/67‑1 (MQ=255) aaaTCCAAAGTGTTGATGGCGGATTTAGGGAAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:2941620/67‑1 (MQ=255) aaaTCCAAAGTGTAGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAaca < 1:9168225/67‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATTCGTAACACt < 1:18588624/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAacac > 1:18951209/1‑67 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:6639511/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:9534912/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:22503735/68‑1 (MQ=255) aaTCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACt < 1:1150976/68‑1 (MQ=255) tCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCg > 1:24054897/1‑68 (MQ=255) tCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCg < 1:21581342/68‑1 (MQ=255) tCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCg > 1:21160317/1‑68 (MQ=255) tCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCg > 1:12178915/1‑68 (MQ=255) ccAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGt > 1:5675705/1‑68 (MQ=255) aGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACg > 1:7816906/1‑67 (MQ=255) aGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACg > 1:5982822/1‑67 (MQ=255) aGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGt < 1:3355098/68‑1 (MQ=255) tgtTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTc > 1:7337272/1‑67 (MQ=255) tgtTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTc > 1:3143191/1‑67 (MQ=255) gtTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGc < 1:24828705/68‑1 (MQ=255) tGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCa < 1:26820068/67‑1 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCTCATCCg > 1:24448622/1‑68 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg > 1:4751127/1‑68 (MQ=255) tGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCg < 1:17354817/68‑1 (MQ=255) cGGATTTATGGTAAGCGATGAAAATCGGCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGc < 1:26718227/67‑1 (MQ=255) cGGATTTAGGGTAAGCGATGAAACTCGTCGGATGCGACATGCGTAACACTCGTCCGTCGCATCCGGc < 1:22041474/67‑1 (MQ=255) agttcacgggaataaacgtaattgccggatgcgacATGCGTAACACTCGTACGTCGCATCCGGCAAtt < 1:27136344‑M1/33‑1 (MQ=255) aTTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAAtt > 1:27373077/1‑68 (MQ=255) aTTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAAt < 1:28618050/67‑1 (MQ=255) ttAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTAc < 1:16976358/68‑1 (MQ=255) tcacgggaataaacgtaattgccggatgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:25729014‑M1/36‑1 (MQ=255) tAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:17573085/68‑1 (MQ=255) tAGGGTAAGAGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACg < 1:23121360/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:29063810/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:19688460/68‑1 (MQ=255) aGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGt < 1:10451630/68‑1 (MQ=255) gggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGtt > 1:8784910/1‑68 (MQ=255) gggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGtt > 1:24476941/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:1786181/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:4084729/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:15751969/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:26487645/1‑68 (MQ=255) ggTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGttt > 1:21730217/1‑68 (MQ=255) tAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTAt > 1:13488278/1‑68 (MQ=255) gCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTc > 1:10718375/1‑67 (MQ=255) gCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTc > 1:8221688/1‑67 (MQ=255) gCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTc > 1:4168982/1‑67 (MQ=255) cGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTccc > 1:19471212/1‑68 (MQ=255) cGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTccc > 1:28422763/1‑68 (MQ=255) gATGAAAATCGTCGGATGCGCCATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCg > 1:7932/1‑68 (MQ=255) gATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTcc < 1:22286002/66‑1 (MQ=255) tGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGt < 1:6262400/67‑1 (MQ=255) acgtaattgccggatgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTg < 1:20764505‑M1/48‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:11111553/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:18732722/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:18320216/68‑1 (MQ=255) gAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa < 1:5255141/68‑1 (MQ=255) aaaTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa > 1:16200752/1‑66 (MQ=255) aaaTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGa > 1:14497978/1‑66 (MQ=255) aTCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTa < 1:26230006/68‑1 (MQ=255) tcgtcgGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTaa < 1:27407910/68‑1 (MQ=255) cggatgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAaaca > 1:4527889‑M1/11‑67 (MQ=255) cggatgcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAaaca < 1:12901190‑M1/57‑1 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:14967241‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:14410377‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:7646725‑M1/6‑68 (MQ=255) gcgacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAcgccg > 1:27063183‑M1/6‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:16017309‑M1/4‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:27690633‑M1/4‑68 (MQ=255) gacATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACgccgcc > 1:27933141‑M1/4‑68 (MQ=255) aCATGCGTACCACTCGTACGTCGCGTCCGGCAATTAGGTTTATTCCCGGGACCTAAACAACGCCGCCa > 1:24699520/1‑68 (MQ=255) cATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAg > 1:20874872‑M1/2‑68 (MQ=255) cATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAg > 1:6849000‑M1/2‑68 (MQ=255) aTGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAg > 1:20303644/1‑67 (MQ=255) | CTACCAGCGTAAATCCAAAGTGTTGATGGCGGATTTAGGGTAAGCGATGAAAATCGTCGGATGCGACATGCGTAACACTCGTACGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGA > CP009273/2943890‑2944024 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |