| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3614228 | NA (NA) | 5 (0.020) | 5/90 | NT | 100% | coding (1677/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor |
| ? | CP009273 | = 3614368 | 0 (0.000) | coding (1817/4236 nt) | rhsB | Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor | |||||
Only 100 of 246 total aligned reads displayed.
ATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTT > CP009273/3614194‑3614293 | gggtactcaccgggctggtgGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAg < 1:27924771‑M2/47‑1 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGCGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:13297793‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGTAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:6565312‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:5519054‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:15001717‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:15336562‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:7561454‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:16139452‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:7062811‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:20178524‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:22110292‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:9724987‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:23575751‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:24102867‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:24428727‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:2564692‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:5024499‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:26415587‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:26641905‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:29565841‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:9276004‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:11901436‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:14474437‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:14040531‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:11179248‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGATGAGTCAGTACCGCGCATACGACAg > 1:15268767‑M2/1‑67 (MQ=255) ACCGCTTCGGGCAGATGACGGCAGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAg > 1:28894028‑M2/1‑67 (MQ=255) cccCTTCGGGCAGTTGAGGGAGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:9606426‑M2/64‑1 (MQ=255) CCGCTTCGGGCAGATGACGGGGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:25440833‑M2/67‑1 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACCGcc > 1:24760384‑M2/1‑68 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGcc > 1:6671341‑M2/1‑68 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGcc > 1:10132351‑M2/1‑68 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGcc > 1:8805989‑M2/1‑68 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGcc > 1:25299561‑M2/1‑68 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGcc > 1:20380572‑M2/1‑68 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGcc > 1:18498431‑M2/1‑68 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGcc > 1:14705493‑M2/1‑68 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:19632704‑M2/67‑1 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:434342‑M2/67‑1 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:19223788‑M2/67‑1 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:27742475‑M2/67‑1 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:11295545‑M2/67‑1 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:7282572‑M2/67‑1 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:7390114‑M2/67‑1 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:3372946‑M2/67‑1 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:15791500‑M2/67‑1 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:12013424‑M2/67‑1 (MQ=255) CCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:361734‑M2/67‑1 (MQ=255) CCGCTTCGGGCAGATGACGGCGGGGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGc < 1:16414405‑M2/67‑1 (MQ=255) CGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCg > 1:5864304‑M2/1‑68 (MQ=255) CGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCg > 1:3832205‑M2/1‑68 (MQ=255) CGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCg > 1:14295679‑M2/1‑68 (MQ=255) CGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCg > 1:16987570‑M2/1‑68 (MQ=255) CGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCg > 1:18197816‑M2/1‑68 (MQ=255) CGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCg > 1:8726866‑M2/1‑68 (MQ=255) TTCGGGCAGATGACGGCGGTGCACCGCGAGGGAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTgg > 1:649174‑M2/1‑68 (MQ=255) TTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTgg < 1:7942128‑M2/68‑1 (MQ=255) TTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTgg > 1:8665980‑M2/1‑68 (MQ=255) TTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTgg < 1:3451826‑M2/68‑1 (MQ=255) TTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTgg < 1:21187118‑M2/68‑1 (MQ=255) TTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTgg < 1:13347583‑M2/68‑1 (MQ=255) TTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCAGACGACAGCCGTgg > 1:5462084‑M2/1‑68 (MQ=255) TTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGGACCGCGCATACGACAGCCGTgg > 1:20092512‑M2/1‑68 (MQ=255) TCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTgg > 1:20539301‑M2/1‑67 (MQ=255) TCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGa < 1:21416403‑M2/68‑1 (MQ=255) CGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGAc > 1:29245033‑M2/1‑68 (MQ=255) CGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGAc < 1:21810760‑M2/68‑1 (MQ=255) GGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACa < 1:9381571‑M2/68‑1 (MQ=255) GGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACa < 1:106504‑M2/68‑1 (MQ=255) GGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACa < 1:28489545‑M2/68‑1 (MQ=255) GGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACa > 1:29679743‑M2/1‑68 (MQ=255) GGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACa < 1:25234468‑M2/68‑1 (MQ=255) GGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACa < 1:8971171‑M2/68‑1 (MQ=255) GCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt > 1:4578307‑M2/1‑68 (MQ=255) GCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt > 1:23760009‑M2/1‑68 (MQ=255) GCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt > 1:23862056‑M2/1‑68 (MQ=255) GCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt > 1:12718072‑M2/1‑68 (MQ=255) GCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt > 1:14812107‑M2/1‑68 (MQ=255) GCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt > 1:15100244‑M2/1‑68 (MQ=255) GCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGACCCGCGCATACGACAGCCGTGGACAGt > 1:15842348‑M2/1‑68 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGtt > 1:11035501‑M2/1‑68 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGtt > 1:26100240‑M2/1‑68 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGtt > 1:19908095‑M2/1‑68 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGtt > 1:17142111‑M2/1‑68 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGtt > 1:16547428‑M2/1‑68 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:17897052‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:10407144‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:11546613‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:12348836‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:13702802‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:27585352‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:6772836‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:19476780‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:20900151‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:22408005‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:22738891‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:27037195‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:27362548‑M2/67‑1 (MQ=255) CAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:4074470‑M2/67‑1 (MQ=255) CAGATGACGGCGGCGCACCGCGAGGAAGTGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGt < 1:13218731‑M2/67‑1 (MQ=255) | ATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACAGCCGTGGACAGTT > CP009273/3614194‑3614293 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |