| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4548130 | 290 (0.810) | 20 (0.070) | 7/88 | NT | 7.4% | intergenic (‑24/+41) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase |
| ? | CP009273 | = 4548153 | 275 (0.970) | intergenic (‑47/+18) | hypT/iadA | hypochlorite‑responsive transcription factor/isoaspartyl dipeptidase | |||||
Only 100 of 597 total aligned reads displayed.
CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAC > CP009273/4548063‑4548197 | cATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCC < 1:13700530‑M1/68‑1 (MQ=255) aTTTGGTTTCATTATTATGCAAAATCGCACCAGAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCt < 1:28573666/68‑1 (MQ=255) ttGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCtt > 1:29162738/1‑67 (MQ=255) tGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGc > 1:277443/1‑68 (MQ=255) ttCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGc > 1:23675478/1‑68 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:18488491/68‑1 (MQ=255) aaTATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAtt < 1:23885803/68‑1 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCAt > 1:4351993/1‑66 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTc < 1:21754196/68‑1 (MQ=255) atatTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTc < 1:16778905/68‑1 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:14116257/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:15170927/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGACAGCCGCCCTTGAGGGCATTCt > 1:24125328/1‑68 (MQ=255) tattatGCAAAATCGCACCACAGTCATCCATGACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:20099198/1‑68 (MQ=255) attatGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCt > 1:1568820/1‑67 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:15303403/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc < 1:14517673/68‑1 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc < 1:478391/68‑1 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc < 1:11447505/68‑1 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:7675692/1‑68 (MQ=255) gCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTcc > 1:23043937/1‑68 (MQ=255) aaaaTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCa < 1:25970881/67‑1 (MQ=255) aTCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCg < 1:29527861‑M2/68‑2 (MQ=255) tCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgg < 1:27289868‑M2/68‑3 (MQ=255) accacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcg < 1:3411265‑M2/67‑6 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:6909829‑M2/1‑61 (MQ=255) ccacAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggc > 1:735660‑M2/1‑61 (MQ=255) acaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctg > 1:6165746‑M2/1‑59 (MQ=255) acaGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctg > 1:26755714‑M2/1‑59 (MQ=255) gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca < 1:22828631‑M2/68‑13 (MQ=255) gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca < 1:21049243‑M2/68‑13 (MQ=255) gTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca < 1:27595279‑M2/68‑13 (MQ=255) cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca > 1:26839971‑M2/1‑54 (MQ=255) cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgaca > 1:13409143‑M2/1‑54 (MQ=255) cATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACaa > 1:9480915/1‑67 (MQ=255) aTCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAAcc < 1:14807577/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagt > 1:6342977‑M1/1‑29 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg > 1:17356163/1‑68 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg > 1:23336707/1‑68 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg < 1:19563088/68‑1 (MQ=255) tCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCg > 1:10789665/1‑68 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCgaatggacgtagaatgcccggaagggcgggtgacagagta > 1:12710839‑M1/1‑28 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:3676276/1‑68 (MQ=255) ccATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGt > 1:24572539/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt > 1:28784966/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt > 1:19705659/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGttt > 1:15531670/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGGCCATTCGGGCGGCTGACAACCGttt > 1:8007852/1‑68 (MQ=255) aTTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTATACGTCCATTCGGGCGGCTGACAACCGttt > 1:28943646/1‑68 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaac > 1:10035145‑M2/1‑47 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaac > 1:16295441‑M2/1‑47 (MQ=255) tACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa > 1:17201350/1‑68 (MQ=255) aCGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTaa > 1:19308118/1‑67 (MQ=255) cGTTTTACTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgt > 1:22131521‑M1/1‑22 (MQ=255) cGTTTTACTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgt > 1:16955872‑M1/1‑22 (MQ=255) cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg > 1:14994905/1‑67 (MQ=255) cGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAg > 1:18698213/1‑67 (MQ=255) gTTTTACTCTGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgta > 1:3867688‑M1/1‑21 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCgggcggctgacagagtaaaacgta > 1:28120662‑M2/1‑44 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:25612211/1‑68 (MQ=255) gTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGcc > 1:5068431/1‑68 (MQ=255) tttACTCTGTCAGCCGCGCTTCCGGGCAGTCTACTTCCATTGGGGCGGCTGACAACCGTTTAAGCCGt < 1:26590486/68‑1 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt < 1:8432173/68‑1 (MQ=255) tttACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGt < 1:5762875/68‑1 (MQ=255) tACTCTGGCAGCCCCCCTTGCGGGCATGCACCGGCCATTCgggcggctgacagagtaaaacgtaatgg > 1:6744662‑M2/1‑40 (MQ=255) aacCCTGGCAGCCGCCCTTGCGGGCATTCACCGGCCATTCgggcggctgacagagtaaaacgtaatgg > 1:11794694‑M2/2‑40 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:19056364/1‑68 (MQ=255) aCTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTc > 1:22336769/1‑68 (MQ=255) ctctGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCa > 1:1196293/1‑68 (MQ=255) tctGTCAGCCGCCCgattggacgtagaatgcccgcaagggcggctgacagaggaaaacgtaatagatg > 1:20408913‑M1/1‑14 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:12221360‑M1/68‑57 (MQ=255) tGTCAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgac < 1:3169312‑M1/68‑57 (MQ=255) gTCAGCCGCCCgaagggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgact < 1:9299662‑M1/68‑58 (MQ=255) gTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACg < 1:29686173/68‑1 (MQ=255) cAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgt < 1:10668057‑M1/68‑60 (MQ=255) cAGCCGCCCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgt > 1:8776481‑M1/1‑9 (MQ=255) cAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt > 1:7045990/1‑67 (MQ=255) cAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGt > 1:4058719/1‑67 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:10206644‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:24959365‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:21294330‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:13102770‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:20803419‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtgg > 1:1643790‑M1/1‑7 (MQ=255) gccgccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgacggtgg > 1:11072478‑M1/1‑7 (MQ=255) ccgccCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt > 1:10005237/1‑68 (MQ=255) cgccCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTc < 1:9663465/65‑1 (MQ=255) cgccCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCt < 1:17516424/67‑1 (MQ=255) gccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgc > 1:17265563‑M1/1‑4 (MQ=255) gccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgc > 1:8978575‑M1/1‑4 (MQ=255) gccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgc > 1:27907223‑M1/1‑4 (MQ=255) gccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgc > 1:20645030‑M1/1‑4 (MQ=255) gccCgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgc > 1:20004028‑M1/1‑4 (MQ=255) gccCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt > 1:1778189/1‑67 (MQ=255) gccCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt > 1:28654221/1‑67 (MQ=255) gccCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCtt > 1:16106101/1‑67 (MQ=255) ccTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCa < 1:12431855/68‑1 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:25338287‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:24300106‑M1/68‑68 (MQ=255) cgaatggacgtagaatgcccgcaagggcggctgacagagtaaaacgtaatggatgactgtggtgcgat < 1:29063533‑M1/68‑68 (MQ=255) | CATTTGGTTTCAATATTATGCAAAATCGCACCACAGTCATCCATTACGTTTTACTCTGTCAGCCGCCCTTGCGGGCATTCTACGTCCATTCGGGCGGCTGACAACCGTTTAAGCCGTTTCAAACGTTCCTTTCAC > CP009273/4548063‑4548197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |