| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 66560 = | 269 (0.750) | 1236 (5.660) +CGTTTTTTTGGATGGAGGAATT |
48/68 | NT | 85.8% | intergenic (‑28/‑314) | araD/araC | pseudogene, truncated/ara regulon transcriptional activator; autorepressor |
| ? | CP009273 | = 3509273 | 404 (1.120) | intergenic (‑1/+106) | dam/damX | DNA adenine methyltransferase/cell division protein that binds to the septal ring | |||||
Only 100 of 2690 total aligned reads displayed.
GTTTAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCA > CP009273/3509206‑3509339 | aaTATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGa < 1:13970714/68‑1 (MQ=255) atatCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCTTGaatt < 1:3885435‑M2/67‑5 (MQ=255) atatCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaatt < 1:15384083‑M2/67‑5 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:11937918‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:21735755‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:20057149‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:6429976‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcc < 1:17232958‑M2/67‑7 (MQ=255) atcatcAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGAGTTTTCTTCATGaattcc < 1:29658344‑M2/67‑7 (MQ=255) tcatcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGactaa < 1:12146533/68‑1 (MQ=255) tcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccat > 1:16463932‑M2/1‑57 (MQ=255) tcaAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGactaacta < 1:22578530/68‑1 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaa < 1:18352035‑M2/68‑16 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaa < 1:19551117‑M2/68‑16 (MQ=255) gCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAAtt > 1:17545087/1‑67 (MQ=255) aGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaa < 1:28632320‑M2/68‑18 (MQ=255) aGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaa < 1:19160546‑M2/68‑18 (MQ=255) aGGGGATACTTGCCCCCTGCCCACTTAAAAAAAGCGCGATTTTTCTTCATGaattactcaatccaaaa < 1:2726759‑M2/68‑18 (MQ=255) gggATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaa < 1:12956823‑M2/68‑20 (MQ=255) gATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatcctaaaaaac < 1:9760417‑M2/68‑22 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacg < 1:9321852‑M2/68‑23 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCtt < 1:5453551/67‑1 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCACGCTGACTAACTAATTACACCtt < 1:29436268/67‑1 (MQ=255) aTACTTGCCCCCTGCCCACTTCAAAAAAGCGCGAGTTTTCTTCATGaattcctccatccaaaaaaacg < 1:9540544‑M2/68‑23 (MQ=255) aCTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacggg < 1:2390414‑M2/68‑25 (MQ=255) aCTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacggg > 1:10284232‑M2/1‑44 (MQ=255) aCTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacggg > 1:29046135‑M2/1‑44 (MQ=255) aCTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacggg > 1:13253914‑M2/1‑44 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:8994234‑M2/68‑26 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:8728400‑M2/68‑26 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:6991939‑M2/68‑26 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:18873480‑M2/68‑26 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt > 1:20894458‑M2/1‑43 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:24484335‑M2/68‑26 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggt < 1:2340302‑M2/68‑26 (MQ=255) cTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTcc > 1:7992257/1‑68 (MQ=255) tGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtat < 1:16959256‑M2/68‑28 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg > 1:16629057‑M2/1‑40 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg > 1:22229411‑M2/1‑40 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatg > 1:1513501‑M2/1‑40 (MQ=255) gCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGc < 1:14558418/68‑1 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga < 1:250655‑M2/68‑31 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga > 1:11342393‑M2/1‑38 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatgga > 1:10004767‑M2/1‑38 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCg > 1:6736912/1‑64 (MQ=255) ccccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCtg < 1:13711818/68‑1 (MQ=255) cccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggag < 1:11638124‑M2/68‑32 (MQ=255) cccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggag > 1:22847223‑M2/1‑37 (MQ=255) cccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggag < 1:7313253‑M2/68‑32 (MQ=255) cccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCtgt < 1:5692987/68‑1 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggaga < 1:4630190‑M2/68‑33 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggaga < 1:11098647‑M2/68‑33 (MQ=255) ccTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCtgtg > 1:26281303/1‑68 (MQ=255) cTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaa > 1:28141723‑M2/1‑35 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATTaattcctccatccaaaaaaacgggtatggagaaac > 1:27044694‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagagac > 1:23146166‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:21950662‑M2/1‑33 (MQ=255) gCCCACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaac > 1:1983047‑M2/1‑33 (MQ=255) cccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca < 1:10809490‑M2/68‑37 (MQ=255) cccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca < 1:8482973‑M2/68‑37 (MQ=255) cccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca < 1:3184147‑M2/68‑37 (MQ=255) cccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca < 1:17854134‑M2/68‑37 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacag < 1:25257088‑M2/68‑38 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacag < 1:14787031‑M2/68‑38 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:25528124‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:26004161‑M2/1‑31 (MQ=255) ccACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaaca > 1:27550645‑M2/1‑31 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:5187585‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:3560739‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:2149062‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:16165984‑M2/1‑30 (MQ=255) cACTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagt > 1:26832368‑M2/1‑30 (MQ=255) cTTCAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtag > 1:24803453‑M2/1‑28 (MQ=255) cTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGc < 1:18113222/68‑1 (MQ=255) cAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagaga > 1:24210253‑M2/1‑25 (MQ=255) cAAAAAAGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagaga > 1:26520559‑M2/1‑25 (MQ=255) aaaaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagt < 1:12698419‑M2/68‑46 (MQ=255) aaaaaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCg > 1:7732509/1‑67 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:23701672‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:5948532‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:4375521‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:13422451‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:27866270‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagtt < 1:213008‑M2/67‑47 (MQ=255) aaaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACa > 1:25712302/1‑68 (MQ=255) aaaGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACa > 1:10629580/1‑68 (MQ=255) aaGCGCGATTTTTCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgc > 1:18612039‑M2/1‑20 (MQ=255) ttttCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagag < 1:8221245‑M2/53‑43 (MQ=255) tttCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagc > 1:15860873‑M2/1‑10 (MQ=255) tttCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagc > 1:12421509‑M2/1‑10 (MQ=255) tttCTTCATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagc > 1:7561395‑M2/1‑10 (MQ=255) tttCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAgcgc < 1:4153882/68‑1 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca > 1:4960407‑M2/1‑6 (MQ=255) ttcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtca > 1:20647934‑M2/1‑6 (MQ=255) ttcATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCa > 1:20343181/1‑68 (MQ=255) tcATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcag > 1:15583933‑M2/1‑5 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:622918‑M2/1‑4 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:1423493‑M2/1‑4 (MQ=255) cATGaattcctccatccaaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcagg > 1:10424641‑M2/1‑4 (MQ=255) tGaattcctccatccaaaaaacgggtatggagaaacagtagagagttgcgataaaaagcgtcaggtag > 1:28419321‑M2/1‑2 (MQ=255) | GTTTAATATCATCAAGCAGGGGATACTTGCCCCCTGCCCACTTCAAAAAAGCGCGATTTTTCTTCATGCTGACTAACTAATTACACCTTCTCCGGCTGTGGAGAAAGCTCCGACAGCATCCAGCGCTTCAGGCA > CP009273/3509206‑3509339 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |