New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	360168 =	NA (NA)	57 (0.190)	14/94	NT	NA	intergenic (‑102/+493)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor
	?	CP009273	360191 =	NA (NA)					intergenic (‑125/+470)	lacZ/lacI	pseudogene, truncated/DNA‑binding transcriptional repressor

CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTC  >  CP009273/360139‑360245                                                     |                                                       cagccTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGc                                         <  1:28261360/65‑1 (MQ=1)         ggtccGTTGGTTGGCTACGTTCATATCATATCACGGCGGATTTGTCCTACTCAGGAGAGCGTTCAcc                                  <  1:14316398/64‑1 (MQ=0)                 gcgtCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaaca                          >  1:6739425/4‑67 (MQ=1)                 gcgtCGCAACCTTCAAATCCGCTCCCGGCGGATTTGGCCTACTCAGGAGCGCGATCACCGacaaaca                          >  1:13377873/4‑67 (MQ=1)                          cggtCAAATCATCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaaa                <  1:29508209/65‑1 (MQ=1)                                        cctggcggTTTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTc  <  1:16175775/65‑1 (MQ=0)                                        cctggcggATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTc  <  1:20617725/65‑1 (MQ=1)                                                     |                                                       CACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTC  >  CP009273/360139‑360245

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.