| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1111080 = | NA (NA) | 5 (0.020) | 3/90 | NT | NA | intergenic (‑134/+38) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase |
| ? | CP009273 | 1111111 = | NA (NA) | intergenic (‑165/+7) | mdtG/lpxL | putative drug efflux system protein/lauryl‑acyl carrier protein (ACP)‑dependent acyltransferase | |||||
Only 100 of 519 total aligned reads displayed.
GCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT > CP009273/1111044‑1111176 | gCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATg > 1:17912806/1‑68 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:10006957/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:15732919/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:562802/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:12157438/68‑1 (MQ=255) ttATCGCTAAATCAGGGGGATTTGCTGGGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGgag < 1:18925844/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:14542/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt > 1:18642820/1‑68 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:490010/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:14850661/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:12867383/68‑1 (MQ=255) aTCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAt < 1:23857515/68‑1 (MQ=255) cGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAttt < 1:17056941/68‑1 (MQ=255) cGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAttt > 1:6154322/1‑68 (MQ=255) cGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGAttt < 1:27935436/68‑1 (MQ=255) ccttcacgctattaaatcacccatgccggatgcttcagaatgccatccggcatGGGAGATTTAATAGc < 1:8026284‑M2/15‑1 (MQ=255) ccttcacgctattaaaacacccatgccggaggcttcagaatggcatccggcatGGGAGATTTAATAGc < 1:24207559‑M2/15‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:18080317/68‑1 (MQ=255) aTCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGc < 1:13206141/68‑1 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg > 1:12239269/1‑68 (MQ=255) tCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCg > 1:27104088/1‑68 (MQ=255) aGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTg > 1:26631431/1‑68 (MQ=255) ggggATTTGCTGTGGTAATGCCGGATGCCATTCTGCAGCATCCGGCATGGGAGATTTAATAGCGTGaa > 1:5765337/1‑68 (MQ=255) ggggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa > 1:1061957/1‑68 (MQ=255) acgctattaaatctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGaa < 1:15635811‑M1/51‑1 (MQ=255) gggATTTTCTGTGGTAATGCAGGATGCCATTCTGAAGCATCCTGCATGGGAGATTTAATAGCGTGAAg > 1:6934231/1‑68 (MQ=255) gggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAg > 1:9113989/1‑68 (MQ=255) gggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAg > 1:16571610/1‑68 (MQ=255) ggATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAgg > 1:9720109/1‑68 (MQ=255) gATTTGCTGTGGTAATACCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAgg < 1:29773039/67‑1 (MQ=255) ttGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACg < 1:11746430/68‑1 (MQ=255) gCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGcc < 1:27799257/68‑1 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt > 1:664765/1‑67 (MQ=255) tgtgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCt > 1:9345005/1‑67 (MQ=255) tgGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTcc > 1:22975841/1‑68 (MQ=255) ctcccATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTcc < 1:1021077‑M1/63‑1 (MQ=255) TGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgt < 1:26156566‑M1/68‑1 (MQ=255) TGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgt < 1:3368032‑M1/68‑1 (MQ=255) CCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt < 1:5371818‑M1/68‑1 (MQ=255) CCGGATGCCAATCTGAAGCATCCGGCATGGGAGATTTAATAGCCTGAAGGAACGCCTTCCGGGCgtgt < 1:25175968‑M1/68‑1 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt > 1:18449423‑M1/1‑67 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt > 1:21826576‑M1/1‑67 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt > 1:1382461‑M1/1‑67 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGtt > 1:11211661‑M1/1‑68 (MQ=255) CGGATGCCATTCTGAAGCATCCGGCACGTGAAATTTAATAGCGTGAAGGAACGCCTTCCGGGCgtgt > 1:20460455‑M1/1‑67 (MQ=255) TGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTaa < 1:7518034‑M1/68‑1 (MQ=255) TGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTaa < 1:7381989‑M1/68‑1 (MQ=255) GCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTaaa < 1:2207753‑M1/68‑1 (MQ=255) cATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGc < 1:29341975/68‑1 (MQ=255) cTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACg < 1:27293731/68‑1 (MQ=255) cTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACg < 1:11401031/68‑1 (MQ=255) tGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACgg < 1:14139682/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:22741681/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:76635/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:3619966/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:25357140/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:21049702/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:20230653/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:10925564/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt > 1:29096659/1‑68 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:28827404/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgt < 1:28621295/68‑1 (MQ=255) gAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTCTTAAAGCGACGgt < 1:21571348/68‑1 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:17281852/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:19841179/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:24501121/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:21124746/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:26055118/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtgt > 1:19259509/1‑68 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtg < 1:4235272/67‑1 (MQ=255) aGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGgtg < 1:1754702/67‑1 (MQ=255) atccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAc < 1:20562857‑M2/59‑1 (MQ=255) atccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAc < 1:19049930‑M2/59‑1 (MQ=255) ccggcatGGGAGATTTTATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:16036902‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAAcc > 1:26339211‑M2/8‑67 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:22162941‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:14956727‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:23176965‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:6316112‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:15212177‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:8223650‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:8606224‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:19668859‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:3170260‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:27694154‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:16907029‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:28338863‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:2556735‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:2483346‑M2/61‑1 (MQ=255) ccggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACca < 1:27536590‑M2/61‑1 (MQ=255) cggcatGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACcac < 1:12984925‑M2/62‑1 (MQ=255) catGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACata > 1:464960‑M2/4‑68 (MQ=255) catGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACat < 1:3812013‑M2/64‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:13693552‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:13464256‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:5041406‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:29571978‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:21317842‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:268226‑M2/66‑1 (MQ=255) atGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACatat < 1:17419717‑M2/66‑1 (MQ=255) | GCTTTTATCGCTAAATCAGGGGGATTTGCTGTGGTAATGCCGGATGCCATTCTGAAGCATCCGGCATGGGAGATTTAATAGCGTGAAGGAACGCCTTCCGGGCGTGTTTTAAAGCGACGGTGTAACCACATAT > CP009273/1111044‑1111176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |