| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1426915 = | NA (NA) | 3 (0.010) | 3/110 | NT | NA | coding (248/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein |
| ? | CP009273 | 1426969 = | NA (NA) | coding (302/576 nt) | tfaR | Rac prophage; putative tail fiber assembly protein | |||||
GTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGA > CP009273/1426902‑1427013 | gTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATc < 1:29792799/68‑1 (MQ=35) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCg > 1:13489925/1‑67 (MQ=35) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCg > 1:6388576/1‑67 (MQ=35) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCg < 1:20056331/67‑1 (MQ=35) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCg > 1:20914848/1‑67 (MQ=35) ggCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGc < 1:27510123/68‑1 (MQ=35) cTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGcc < 1:6391932/67‑1 (MQ=35) cTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCg > 1:18886135/1‑68 (MQ=35) ttCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCg < 1:1480516/67‑1 (MQ=35) ttCCGGCAACGCGTGATTTATTTCTGAACTCGGTCCGTTACCGGAAAAAGTTACCTGGTTATCGCCgg > 1:21539276/1‑68 (MQ=255) ccGGCAACGCGTTATTTTTTTCTGAACTCGGTCCGTTTCCGGAAAATGTTACCTGGTTATCGCCGGaa < 1:708218/68‑1 (MQ=11) cGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAg < 1:19925097/68‑1 (MQ=35) cGGCAACGCGTTATTTATTTCTGAACTAGGTCCCTTACCGGAAAATGATACCTGGTTATCGCCGGAAg > 1:15461371/1‑68 (MQ=11) ggCAACGCGTTATTTATTTCTGAACTCTGTCCGTTACCGGAAAATGTTACCTTGTTATCGCCGGAAgg < 1:26166595/68‑1 (MQ=11) ggCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAgg > 1:6406714/1‑68 (MQ=35) ggCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAgg < 1:7478762/68‑1 (MQ=35) gCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:498133/1‑68 (MQ=35) gCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:7781581/1‑68 (MQ=35) gCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:9197603/1‑68 (MQ=35) gCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:25566563/1‑68 (MQ=35) gCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:16747049/1‑68 (MQ=35) gCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:15806334/1‑68 (MQ=35) gCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:12377845/1‑68 (MQ=35) gCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg > 1:11272207/1‑68 (MQ=35) cAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAggg < 1:6309617/67‑1 (MQ=33) aaCGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGa > 1:23082620/1‑68 (MQ=31) aaCGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGa < 1:7472044/68‑1 (MQ=31) aaCGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGACGGAAGGGGa > 1:5765836/1‑68 (MQ=14) cgatCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAg < 1:16654978/65‑1 (MQ=1) gggccGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGc < 1:10716692/65‑1 (MQ=1) gggccGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGc < 1:22951601/65‑1 (MQ=1) gggccGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGc < 1:7951977/65‑1 (MQ=1) gggccGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGc < 1:8666729/65‑1 (MQ=1) gggccGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTGCAGAAGTGGAACGGCACAGc < 1:23368332/65‑1 (MQ=0) tttccGGAAAATGTTACCTGGTTATCGCCGTAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTggg < 1:5054456/64‑1 (MQ=0) actggAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGa < 1:21703133/65‑1 (MQ=1) | GTGGCTTCCGGCAACGCGTTATTTATTTCTGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGA > CP009273/1426902‑1427013 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |