| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2402276 | NA (NA) | 9 (0.030) | 5/96 | NT | NA | noncoding (6/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | CP009273 | = 2402283 | NA (NA) | noncoding (13/19 nt) | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
Only 100 of 335 total aligned reads displayed.
AGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGA > CP009273/2402216‑2402350 | aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCATCTGTAATCTTAATTTCACTGCCGGAGATTCCa > 1:23426723/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:602248/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:5392118/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:22397023/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:1996061/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:19549991/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCa > 1:16953771/1‑68 (MQ=255)aGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTCCCGGAGATTCCa > 1:12003030/1‑68 (MQ=255) cAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTTCAt < 1:28103072‑M2/67‑2 (MQ=255) cAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAt < 1:3322323‑M2/67‑2 (MQ=255) aGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCAtccg < 1:9849872‑M2/68‑5 (MQ=255) gcgcgTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGc < 1:11869919/68‑1 (MQ=255) ccTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATccc < 1:25112899/68‑1 (MQ=255) tttCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCg > 1:10879752/1‑67 (MQ=255) tttCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCg > 1:2742232/1‑67 (MQ=255) tCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCca < 1:1002390/68‑1 (MQ=255) cTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCcac < 1:26939746/68‑1 (MQ=255) cTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCcac < 1:23312109/68‑1 (MQ=255) cTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCcac < 1:16585027/68‑1 (MQ=255) ggTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACaa > 1:29215535/1‑68 (MQ=255) ggTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACaa > 1:25471737/1‑68 (MQ=255) ggTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACaa > 1:22185632/1‑68 (MQ=255) gTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAAt > 1:13056194/1‑68 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGa < 1:7338185/68‑1 (MQ=255) tATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATATCATCCGGCAGCGTTATCCCGCCACAATg > 1:4850515/1‑67 (MQ=255) atcatcAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGAc < 1:13798219/68‑1 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtg > 1:28668297/1‑68 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtg > 1:14764223/1‑68 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtg > 1:15393742/1‑68 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtg > 1:15779825/1‑68 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtg > 1:22946178/1‑68 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtg > 1:12456360/1‑68 (MQ=255) atcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGATATCCCGCCACAATGACCtg > 1:16063895/1‑68 (MQ=255) tcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtga > 1:4538960/1‑68 (MQ=255) tcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtga > 1:24070062/1‑68 (MQ=255) tcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtga < 1:8540789/68‑1 (MQ=255) tcaGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtga < 1:23142343/68‑1 (MQ=255) caGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgat < 1:6928201/68‑1 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:28805974/1‑68 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:24576005/1‑68 (MQ=255) gCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCtgatga > 1:13933241/1‑68 (MQ=255) tGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGatgatg > 1:21005682/1‑68 (MQ=255) gTAATCTTAATTTCACTGCCGGAGATTGCAtccggcagtgaaattaagattacagctgatgataacca > 1:18380329‑M2/1‑30 (MQ=255) gTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGt < 1:10181668/68‑1 (MQ=255) gTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGt < 1:4153825/68‑1 (MQ=255) aaTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtca < 1:9032113/68‑1 (MQ=255) aTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcat < 1:10639218/68‑1 (MQ=255) aTCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcat < 1:3481589/68‑1 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:15133211/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc < 1:6238862/68‑1 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:20530017/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:15582123/1‑68 (MQ=255) tCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGtcatc > 1:2478721/1‑68 (MQ=255) tCTTAATATCACTGCCGGAGATTGCAtccggcagtgaaattaagattacagctgatgataaccagaaa > 1:2142373‑M2/1‑26 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:21035271/68‑1 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:927037/68‑1 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:4801737/68‑1 (MQ=255) tAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATa < 1:19304842/68‑1 (MQ=255) tAATTTCACTGCATTAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATTATGTCATCATa < 1:1674767/68‑1 (MQ=255) aaTTTCTCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATAc < 1:8674120/68‑1 (MQ=255) aaTTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATAc < 1:18820738/68‑1 (MQ=255) aaTTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATAc < 1:20634087/68‑1 (MQ=255) aTTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACg < 1:11338645/68‑1 (MQ=255) aTTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACg < 1:3619261/68‑1 (MQ=255) aTTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACg < 1:29468628/68‑1 (MQ=255) tttCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGt > 1:18163983/1‑68 (MQ=255) tttCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGt > 1:23590053/1‑68 (MQ=255) ttCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTa > 1:28244573/1‑68 (MQ=255) aCTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAgg < 1:13542052/68‑1 (MQ=255) gCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCa < 1:6552573/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:5734638/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:17118733/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:9597560/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:8862947/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:12584377/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:21790724/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:1633044/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:22790126/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:14417403/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:4954284/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:23889372/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:26017009/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:25253642/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:4277309/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:3015674/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACt < 1:463594/68‑1 (MQ=255) cGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACATAAGGTCACt < 1:17897675/68‑1 (MQ=255) ggAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTa > 1:24428509/1‑68 (MQ=255) agaTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAt < 1:7821413/67‑1 (MQ=255) agaTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTAt < 1:17319817/67‑1 (MQ=255) agaTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATg > 1:7684164/1‑68 (MQ=255) aTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa > 1:2573868/1‑68 (MQ=255) aTTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa > 1:26516623/1‑68 (MQ=255) ttGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa < 1:3911512/67‑1 (MQ=255) ttGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa < 1:18595295/67‑1 (MQ=255) ttGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGaa < 1:9259533/67‑1 (MQ=255) ttGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGa < 1:17525987/66‑1 (MQ=255) tGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAAc > 1:14572364/1‑68 (MQ=255) aTCCGGCAGCGTTATCCCGCCACAATGACCTGATGTTGTCATCATACGTAAGGTCACTATGAAACaga < 1:14236101/68‑1 (MQ=255) aTCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACaga > 1:10429996/1‑68 (MQ=255) | AGCAAGTTCGCGCGTTTCCTTTCTGGTTATCATCAGCTGTAATCTTAATTTCACTGCCGGAGATTGCATCCGGCAGCGTTATCCCGCCACAATGACCTGATGATGTCATCATACGTAAGGTCACTATGAAACAGA > CP009273/2402216‑2402350 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |