| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2787501 | NA (NA) | 5 (0.020) | 4/98 | NT | NA | noncoding (115/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | = 2787551 | NA (NA) | intergenic (+177/‑61) | gabT/gabP | 4‑aminobutyrate aminotransferase, PLP‑dependent/gamma‑aminobutyrate transporter | |||||
Only 100 of 461 total aligned reads displayed.
ATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATGGGG > CP009273/2787485‑2787617 | aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:27255298/1‑67 (MQ=255)aTCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTg > 1:21960984/1‑67 (MQ=255) tCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGa < 1:4941336‑M2/67‑2 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc > 1:2025827‑M2/1‑61 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:18206651‑M2/68‑8 (MQ=255) gTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:11535708‑M2/68‑8 (MQ=255) ttGGCCGGGTAAGGCGGACCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggc < 1:8349778‑M2/67‑8 (MQ=255) ggtcGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGcgcg < 1:15863839/65‑1 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:17962048/1‑68 (MQ=255) ccGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg > 1:14362936/1‑68 (MQ=255) cGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCggg < 1:4611399/67‑1 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAAt < 1:21578173/67‑1 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAAt < 1:28930491/67‑1 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAAt < 1:5185781/67‑1 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAAt < 1:23238349/67‑1 (MQ=255) tAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAAAAACAATTATACGCGTGACCCGGCGCGGGAAAt < 1:29837482/67‑1 (MQ=255) aaGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGacccggccaacatagat > 1:19352774‑M2/1‑50 (MQ=255) gCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgg > 1:13379757/1‑68 (MQ=255) gCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgg > 1:9304478/1‑68 (MQ=255) gCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCgg > 1:5682461/1‑68 (MQ=255) cGGAGCCGCTCTCCGGCAAAAAGAATCAATATCAATTATACGCGTGACCCGGCGCGGGAAATGTCggg > 1:12987753/1‑68 (MQ=255) cGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCggg > 1:17368121/1‑68 (MQ=255) cGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCggg > 1:15174994/1‑68 (MQ=255) gCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgc > 1:3251414/1‑66 (MQ=255) cGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgcgc < 1:10632466/66‑1 (MQ=255) cGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGgcgc > 1:4184165/1‑66 (MQ=255) cGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctc < 1:15448606/68‑1 (MQ=255) cGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctc < 1:28381074/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:22832161/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:5889553/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:9678604/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:3910222/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:27773734/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:7837451/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:20908619/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:29469536/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:11381020/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:13075219/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctct < 1:16067383/68‑1 (MQ=255) gCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGctca < 1:2494057/68‑2 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTcc < 1:19626525/68‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTcc < 1:18787680/68‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTcc < 1:2522184/68‑1 (MQ=255) tctcCGGCAAAAAGAATCAATAACAATTATACGCCTGACCCGGCGCGGGAAATGTCGGGGCGCTCTcc < 1:13766237/68‑1 (MQ=255) ctcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTccc < 1:29358743/68‑1 (MQ=255) tcCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCa > 1:26337914/1‑68 (MQ=255) ggCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGt < 1:8257078/68‑1 (MQ=255) ggCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGt < 1:16523671/68‑1 (MQ=255) ggCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGt < 1:22103207/68‑1 (MQ=255) aaaaaGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGac < 1:24616542/68‑1 (MQ=255) aGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGacacac < 1:11584595/68‑1 (MQ=255) aGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGacacac < 1:14588666/68‑1 (MQ=255) aGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGacacac < 1:9111809/68‑1 (MQ=255) aTCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACttt < 1:23550608/68‑1 (MQ=255) aTCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACttt < 1:18950949/68‑1 (MQ=255) aTCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACt < 1:6446852/66‑1 (MQ=255) aCAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAgg > 1:7505201/1‑68 (MQ=255) aCAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAgg < 1:11105625/68‑1 (MQ=255) aCAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAgg > 1:27906436/1‑68 (MQ=255) aCAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAgg > 1:12136341/1‑68 (MQ=255) aCAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAgg > 1:16322397/1‑68 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:14022195/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:12661758/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:27085688/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:8718685/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:19874076/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:29768291/68‑1 (MQ=255) cAATTATACGCGTGACCCGGCGCGGAAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:20130040/68‑1 (MQ=255) cAATTATACGCGGGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGa < 1:6897561/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:4823467/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:9399439/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:24030339/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt > 1:22184374/1‑68 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:10522656/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:12022919/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt > 1:17083688/1‑68 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:17825056/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:20596179/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:21222162/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:22994039/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:2617222/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:27042348/68‑1 (MQ=255) aaTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt < 1:2674461/68‑1 (MQ=255) aTTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGAt > 1:26482982/1‑67 (MQ=255) ttATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTc > 1:25707997/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:22690039/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:6718941/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:7135453/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:21388385/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:5038868/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:8923709/1‑68 (MQ=255) aCGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGa > 1:18314515/1‑68 (MQ=255) cgcgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGAt < 1:7223223/68‑1 (MQ=255) cgcgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGAt < 1:26572172/68‑1 (MQ=255) gcgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGGGACACACTTTCGAGAGGATTCAGGATg > 1:25551761/1‑68 (MQ=255) cgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg > 1:10084812/1‑68 (MQ=255) cgTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATgg > 1:28684522/1‑68 (MQ=255) gTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATggg < 1:8148641/68‑1 (MQ=255) gTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATggg < 1:15599732/68‑1 (MQ=255) gTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATggg < 1:3627282/68‑1 (MQ=255) | ATCTATGTTGGCCGGGTAAGGCGGAGCCGCTCTCCGGCAAAAAGAATCAATAACAATTATACGCGTGACCCGGCGCGGGAAATGTCGGGGCGCTCTCCCAAGTGACACACTTTCGAGAGGATTCAGGATGGGG > CP009273/2787485‑2787617 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |