New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 3256491 =497 (1.380)22 (0.080) 11/90 NT 5.8% coding (529/1209 nt) tdcD propionate kinase/acetate kinase C, anaerobic
?CP009273 3256545 = 320 (1.110)coding (475/1209 nt) tdcD propionate kinase/acetate kinase C, anaerobic

Only 100 of 633 total aligned reads displayed.

TAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTT  >  CP009273/3256478‑3256612
                                                                   |                                                                   
tAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAg                                                                     <  1:18655777/68‑1 (MQ=255)
 atttatacggcctgccgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcagg                                                                    <  1:7815214‑M2/2‑1 (MQ=255)
  gCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACCCCTAACTCGTGATAATAATTCCACGGCCgg                                                                    >  1:5332489/1‑67 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGcc                                                                  <  1:8656666/67‑1 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGcc                                                                  <  1:24936638/67‑1 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGc                                                                   <  1:23762240/66‑1 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGc                                                                   <  1:17188787/66‑1 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGc                                                                   <  1:15008527/66‑1 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                 >  1:10887146/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                 >  1:16895467/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                 >  1:24723422/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                 >  1:22170652/1‑68 (MQ=255)
    ggTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCg                                                                 >  1:4139572/1‑68 (MQ=255)
     gTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                >  1:28503663/1‑68 (MQ=255)
     atacggccagccgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcaGGCCGt                                                                <  1:10936786‑M2/6‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:1779302/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:27419306/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:26240470/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:18915731/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:5457705/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:23527977/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:7060853/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGt                                                                <  1:12753081/67‑1 (MQ=255)
      tGCGACGTGCCGTGGAAACCAAAACGGCGTACACCTAACTCTTCATAATAATTCCACGGCAGGCCGt                                                                <  1:2818833/67‑1 (MQ=255)
       gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtat                                                              <  1:6016183/68‑1 (MQ=255)
       gCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGta                                                               <  1:11765044/67‑1 (MQ=255)
       acggcctgccgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcaGGCCGtat                                                              <  1:27841177‑M2/8‑1 (MQ=255)
       acggccTGCCGTGGAAACCATAACGGCGTACTCCTAACTCTTCATAATTTTTCCACGGCAGGCCGtat                                                              <  1:20572195‑M1/62‑1 (MQ=255)
         gACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGtata                                                             <  1:17498161/67‑1 (MQ=255)
            gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCCGGCCGTataaata                                                         >  1:22539591/1‑68 (MQ=255)
            gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaata                                                         >  1:27691624/1‑68 (MQ=255)
            gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaata                                                         >  1:23420974/1‑68 (MQ=255)
            gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaata                                                         >  1:21644079/1‑68 (MQ=255)
            gTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTataaata                                                         >  1:5118451/1‑68 (MQ=255)
                cgtggaaatattatgaagagttaggtgtacgccgttatggtttccacggcaGGCCGTATAAATAAGCt                                                     <  1:618343‑M2/17‑1 (MQ=255)
                CGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGc                                                      >  1:9094471‑M1/1‑67 (MQ=255)
                 GTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCCCGGCAGGCCGTATAAATAAGCt                                                     <  1:1253345‑M1/67‑1 (MQ=255)
                 GTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCt                                                     <  1:27155401‑M1/67‑1 (MQ=255)
                   GGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTc                                                   >  1:2995324‑M1/1‑67 (MQ=255)
                     AAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCg                                                 <  1:8293802‑M1/67‑1 (MQ=255)
                      AACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGa                                               <  1:21024766‑M1/68‑1 (MQ=255)
                        ccATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGc                                             <  1:1850866/68‑1 (MQ=255)
                           tAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCAt                                          <  1:19898555/68‑1 (MQ=255)
                             aCGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:20785640/1‑68 (MQ=255)
                              cGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGt                                       <  1:8451397/68‑1 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:25481150/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:10261433/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:29725134/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:16220950/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:11497264/1‑66 (MQ=255)
                               ggCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCg                                        >  1:13716532/1‑66 (MQ=255)
                                  gTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGt                                       <  1:13426411/64‑1 (MQ=255)
                                    acacCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtggt                                  <  1:25146500/67‑1 (MQ=255)
                                     taggtgtacccggttatgggtaccacggcaGGCCGTAAAAATAAGCTTCCGGAGCCATCGTCtggtg                                 <  1:24197364‑M2/37‑1 (MQ=255)
                                     cacCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCtggggg                                <  1:22920642/68‑1 (MQ=255)
                                      acCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGa                               >  1:7555283/1‑68 (MQ=255)
                                      acCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGa                               >  1:19395231/1‑68 (MQ=255)
                                           aCTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTg                          >  1:10022498/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                         >  1:28871855/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                         >  1:29424955/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                         >  1:6438899/1‑68 (MQ=255)
                                            ctctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTgg                         >  1:9751694/1‑68 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGGCATCGTCTGGTGGAAACTGGt                        <  1:12221127/68‑1 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                        <  1:13274690/68‑1 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                        >  1:19647352/1‑68 (MQ=255)
                                             tctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGt                        <  1:21947824/68‑1 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                       >  1:13101772/1‑68 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                       >  1:23318081/1‑68 (MQ=255)
                                              ctTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTa                       >  1:15763352/1‑68 (MQ=255)
                                               ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTAt                      <  1:2147525/68‑1 (MQ=255)
                                               ttCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTAt                      <  1:15958959/68‑1 (MQ=255)
                                                  ataataTTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCaa                   >  1:14644046/1‑68 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCaaa                  >  1:10551227/1‑66 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:9569961/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:24501416/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:20039219/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:25881143/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:26633690/1‑67 (MQ=255)
                                                     atatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAAt                 >  1:18057766/1‑67 (MQ=255)
                                                      tatTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATa                >  1:13999879/1‑67 (MQ=255)
                                                       atTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATAcc              >  1:567068/1‑68 (MQ=255)
                                                       atTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATAcc              >  1:11178069/1‑68 (MQ=255)
                                                       atTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATAcc              >  1:14777993/1‑68 (MQ=255)
                                                          tccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGcc           >  1:4494169‑M2/10‑68 (MQ=255)
                                                          tccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGcc           >  1:29129432‑M2/10‑68 (MQ=255)
                                                          tccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGcc           >  1:678083‑M2/10‑68 (MQ=255)
                                                          tccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGcc           >  1:20316991‑M2/10‑68 (MQ=255)
                                                           ccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCa          <  1:15523252‑M2/60‑1 (MQ=255)
                                                           ccacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCa          <  1:6983316‑M2/60‑1 (MQ=255)
                                                            cacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCa          >  1:21290820‑M2/8‑67 (MQ=255)
                                                            cacggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCAc         <  1:15261887‑M2/61‑1 (MQ=255)
                                                             acggcaGGTCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCAcc        <  1:14337516‑M2/62‑1 (MQ=255)
                                                             acggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCAcc        <  1:16497414‑M2/62‑1 (MQ=255)
                                                              cggcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCa          >  1:8015070‑M2/6‑65 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa     >  1:3275011‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa     >  1:25717759‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa     >  1:3657352‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa     >  1:26819538‑M2/4‑68 (MQ=255)
                                                                gcaGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGa     >  1:4808862‑M2/4‑68 (MQ=255)
                                                                   ggCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGtt  >  1:3979541/1‑68 (MQ=255)
                                                                   |                                                                   
TAGCGGTGCGACGTGCCGTGGAAACCATAACGGCGTACACCTAACTCTTCATAATATTTCCACGGCAGGCCGTATAAATAAGCTTCCGGAGCCATCGTCTGGTGGAAACTGGTATCAAATACCGCCACCTGAGTT  >  CP009273/3256478‑3256612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.