| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3348965 | 329 (0.910) | 15 (0.050) | 12/96 | NT | 5.2% | coding (882/4461 nt) | gltB | glutamate synthase, large subunit |
| ? | CP009273 | = 3349001 | 260 (0.840) | coding (918/4461 nt) | gltB | glutamate synthase, large subunit | |||||
Only 100 of 640 total aligned reads displayed.
TAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATGC > CP009273/3348935‑3349068 | aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:913519‑M2/68‑4 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:11317456‑M2/68‑4 (MQ=255) aCATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAccc < 1:14213763‑M2/68‑4 (MQ=255) aCATGCTGGAACTGCTGCGGGCATTCGGTATTGATATCATCCGCGCCATGCGTCTATTAGTACCAccc > 1:6408387‑M2/1‑65 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:16750985‑M2/67‑5 (MQ=255) aTGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:19935196‑M2/67‑5 (MQ=255) tGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcc > 1:14590143‑M2/1‑62 (MQ=255) tGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccg < 1:12610101‑M2/66‑5 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:27291464‑M2/1‑59 (MQ=255) tGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctg > 1:15073294‑M2/1‑59 (MQ=255) aCTGCTGCTGGGAGGCGGGTTGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAg < 1:22554557/67‑1 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:13185982/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:5600639/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:5125140/1‑68 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa < 1:13964843/68‑1 (MQ=255) aCTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGa > 1:19044520/1‑68 (MQ=255) ctgctgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAgca < 1:23539956/68‑3 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:18726408/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:17386234/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:24846899/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:24624283/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaac < 1:12198249/68‑1 (MQ=255) tgctgGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGaacaa > 1:7272546/1‑67 (MQ=255) ggCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCgg < 1:10026955/68‑1 (MQ=255) gCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:285234/1‑68 (MQ=255) gCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:8650327/1‑68 (MQ=255) gCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:26681888/1‑68 (MQ=255) gCAGGCGGGATGGATATCATCCGCGCCATGCGTATATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:23725913/1‑68 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGat < 1:12491561‑M1/68‑1 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:21967251‑M1/1‑67 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:1719287‑M1/1‑67 (MQ=255) CAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGa > 1:4173304‑M1/1‑67 (MQ=255) GGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGatat < 1:18359812‑M1/68‑1 (MQ=255) GCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATg < 1:6114177‑M1/68‑1 (MQ=255) cGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCAcccgcctgccagcagcagttccagcat > 1:12848708‑M2/1‑40 (MQ=255) GGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATgg > 1:14864536‑M1/1‑67 (MQ=255) GGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATgg > 1:19399027‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:26992927‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:29534654‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:11682604‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:23367418‑M1/1‑67 (MQ=255) GATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAc > 1:9570038‑M1/1‑67 (MQ=255) tggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGAccc < 1:25183722/67‑1 (MQ=255) tggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCg > 1:8019445/1‑68 (MQ=255) ggatATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCgg > 1:18202453/1‑68 (MQ=255) atatCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGa < 1:2278007/67‑1 (MQ=255) tatCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGCCCCGGa > 1:28256317/1‑66 (MQ=255) tatCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGa > 1:214491/1‑66 (MQ=255) tatCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGa > 1:16614208/1‑66 (MQ=255) tatCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAAc < 1:10587689/68‑1 (MQ=255) catcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGc < 1:21617944/68‑1 (MQ=255) atcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCg > 1:10433880/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGCCCCGGAACTGCGt > 1:14446505/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:24168335/1‑68 (MQ=255) tcCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGt > 1:3962986/1‑68 (MQ=255) gcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCctt < 1:4524924/68‑1 (MQ=255) gcCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCct > 1:15794598/1‑67 (MQ=255) cATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCcttct > 1:10890172/1‑68 (MQ=255) cATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCcttct < 1:20826841/68‑1 (MQ=255) cATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCcttc < 1:22277621/67‑1 (MQ=255) cATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCcttc < 1:13762071/67‑1 (MQ=255) cATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCcttc < 1:11080217/67‑1 (MQ=255) aTGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCcttctt < 1:4856138/68‑1 (MQ=255) gTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGa < 1:20223299/67‑1 (MQ=255) gTCAATTAGTACCACCCGCCTGGCAGAACAACCAGGATATGGACCCGGAACTGCCTGCATACTTTg > 1:11756253/1‑66 (MQ=255) cTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt < 1:7604808/67‑1 (MQ=255) cTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt < 1:15538579/67‑1 (MQ=255) cTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACt < 1:1304667/67‑1 (MQ=255) tAGAACCACCCGCCTGGCAGAACAACCCCGATATGGACCCGGAACTGCGTGCCTTCTTTGACATTa > 1:5900913/1‑66 (MQ=255) aGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAAc > 1:8276168/1‑67 (MQ=255) aGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAAc > 1:29819766/1‑67 (MQ=255) aGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACt < 1:8384581/68‑1 (MQ=255) tACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTcc > 1:18629613/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTcc < 1:7061527/67‑1 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTcc < 1:1351500/67‑1 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTcc < 1:19756404/67‑1 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTc < 1:6722125/66‑1 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:3198024/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:29101008/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:16053589/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:16336012/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:26583413/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:8811110/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:532941/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:17833404/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:23981207/1‑68 (MQ=255) accaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCa > 1:1198543/1‑68 (MQ=255) acaaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCTTGCCGTCTTTGACTTTAACACCa > 1:19567671/4‑68 (MQ=255) ccaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCAt > 1:3677072/1‑68 (MQ=255) ccaccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCAt > 1:2617709/1‑68 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATg < 1:3305554/68‑1 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATg < 1:27156766/68‑1 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATg < 1:25783899/68‑1 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATg < 1:25520698/68‑1 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATg < 1:21078106/68‑1 (MQ=255) caccCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATg < 1:24338868/68‑1 (MQ=255) accCGCCTGGCAGAACAACCCGGGTATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATGc < 1:4337387/68‑1 (MQ=255) accCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCGTTCTTTGACTTTAACTCCATGc > 1:14324041/1‑68 (MQ=255) accCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATGc < 1:27996095/68‑1 (MQ=255) accCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATGc > 1:9374063/1‑68 (MQ=255) | TAACATGCTGGAACTGCTGCTGGCAGGCGGGATGGATATCATCCGCGCCATGCGTCTATTAGTACCACCCGCCTGGCAGAACAACCCGGATATGGACCCGGAACTGCGTGCCTTCTTTGACTTTAACTCCATGC > CP009273/3348935‑3349068 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |