| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3385620 = | NA (NA) | 4 (0.010) | 4/102 | NT | NA | noncoding (186/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences |
| ? | CP009273 | 3385646 = | NA (NA) | noncoding (212/308 nt) | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences | |||||
Only 100 of 377 total aligned reads displayed.
GGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGC > CP009273/3385579‑3385684 | ggCCTGATAAGACGCACAGCGTGGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:23469614/68‑1 (MQ=255) gCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCGTTATCCGAc > 1:16319884/1‑68 (MQ=25) gCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:3480150/1‑67 (MQ=35) ccTGATAAGACGCTCAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:13480498/66‑1 (MQ=255) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:19200588/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:19409102/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:6282434/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa < 1:27431337/66‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:28687362/1‑66 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:10163322/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:18723405/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:15719184/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:19490869/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:1419688/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:13991631/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:19831508/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:21043147/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:28546712/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:8885985/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:25196803/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:26991090/67‑1 (MQ=35) ccTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAc < 1:914619/67‑1 (MQ=35) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCt < 1:16977138/68‑1 (MQ=35) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCt < 1:11884/68‑1 (MQ=35) cTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCt < 1:16607197/68‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACgg > 1:25979977/1‑68 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACgg > 1:371123/1‑68 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACgg > 1:29408931/1‑68 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACgg > 1:25550607/1‑68 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACgg > 1:15452836/1‑68 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACgg > 1:16008496/1‑68 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:17711308/67‑1 (MQ=35) tAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACg < 1:9442979/67‑1 (MQ=35) tataCGCACTGGGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTTTCCGTCCTTCGGt < 1:18428401/65‑1 (MQ=11) aaGACGCACAGCGTCGCATCAGTCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGt < 1:17817166/68‑1 (MQ=25) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGGTGCGGCGGAAACGCCGTTTCCGACCGACggg > 1:8396643/1‑67 (MQ=11) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGt < 1:11560719/68‑1 (MQ=35) aaGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGt < 1:28338081/68‑1 (MQ=35) gACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTa > 1:2565085/1‑68 (MQ=35) aCGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt > 1:29636921/1‑68 (MQ=35) cGCACGGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATg > 1:21405473/1‑68 (MQ=25) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTa < 1:25857643/66‑1 (MQ=35) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATg > 1:16098710/1‑68 (MQ=35) cGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATg > 1:5329997/1‑68 (MQ=35) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGt < 1:26185652/68‑1 (MQ=35) gCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGt < 1:13730847/68‑1 (MQ=35) cacaGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGt > 1:681067/1‑67 (MQ=35) acaGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt > 1:12897412/1‑67 (MQ=35) acaGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt > 1:7192530/1‑67 (MQ=35) acaGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt > 1:6015675/1‑67 (MQ=35) gCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGt > 1:10992120/1‑68 (MQ=35) gTCTCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGt < 1:3051602/66‑1 (MQ=25) gTCGCATCTGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt < 1:22500543/68‑1 (MQ=25) gTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt < 1:12008330/68‑1 (MQ=35) gTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt < 1:24766820/68‑1 (MQ=35) gTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt < 1:14401498/68‑1 (MQ=35) gTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGtt < 1:24056611/67‑1 (MQ=35) gTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGt < 1:13581637/66‑1 (MQ=35) gTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGt < 1:15600237/66‑1 (MQ=35) tCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt < 1:9843327/67‑1 (MQ=35) gCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTGCCGTTTGTa > 1:24411542/1‑68 (MQ=25) aTCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg > 1:25381016/1‑67 (MQ=35) aTCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg > 1:27780849/1‑67 (MQ=35) aTCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg > 1:10820105/1‑67 (MQ=35) aTCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg > 1:9019959/1‑67 (MQ=35) aTCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg > 1:7920009/1‑67 (MQ=35) aTCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg > 1:4726594/1‑67 (MQ=35) aTCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGg > 1:6521775‑M2/1‑67 (MQ=255) tCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGTTTATGTTCCGTTTGTAGgc > 1:13301017‑M2/1‑66 (MQ=255) tCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgc > 1:4884655‑M2/1‑66 (MQ=255) tCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgc > 1:21838174‑M2/1‑66 (MQ=255) tCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgc > 1:11601933‑M2/1‑66 (MQ=255) tCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgc > 1:18576795‑M2/1‑66 (MQ=255) tCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGg < 1:28108194‑M2/67‑2 (MQ=255) cAGGCAACGGCTGGCGGATGCGGCGTAAACGCCTTATCCGACCTACGTTTATGTTCCGTTTGTAGgcc > 1:19981845‑M2/1‑65 (MQ=255) cAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcc > 1:17094301‑M2/1‑65 (MQ=255) gCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcctga < 1:1267361‑M2/68‑7 (MQ=255) gCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcctga < 1:10495322‑M2/68‑7 (MQ=255) gCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcctga < 1:5710132‑M2/68‑7 (MQ=255) cAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcctgat < 1:7624948‑M2/68‑8 (MQ=255) cAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcctgat < 1:18156067‑M2/68‑8 (MQ=255) cAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcctga > 1:18931099‑M2/1‑61 (MQ=255) cAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcctga > 1:5114869‑M2/1‑61 (MQ=255) cAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcctg > 1:25726935‑M2/1‑61 (MQ=255) cAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcct > 1:6936954‑M2/1‑61 (MQ=255) cAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcct > 1:399815‑M2/1‑61 (MQ=255) aaCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcctgat > 1:26523553‑M2/1‑60 (MQ=255) aaCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgcctgat > 1:14574586‑M2/1‑60 (MQ=255) aCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:4462786/68‑1 (MQ=35) aCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:21721680/68‑1 (MQ=35) aCGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATaa < 1:10249322/68‑1 (MQ=35) ggCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAg > 1:8731551/1‑67 (MQ=35) ggCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAg > 1:20988211/1‑67 (MQ=35) ggCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 1:3354558/68‑1 (MQ=35) gccTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 1:19277480/66‑1 (MQ=25) gCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc > 1:28922244/1‑68 (MQ=35) gCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGGTTGTAGGCCTGATAAGAc > 1:20538878/1‑68 (MQ=25) cTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc < 1:27837449/67‑1 (MQ=35) tGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc < 1:12104700/68‑1 (MQ=35) cGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGgc < 1:27481778‑M2/38‑3 (MQ=255) | GGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGC > CP009273/3385579‑3385684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |