New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 3613190	NA (NA)	3 (0.010)	3/86	NT	100%	coding (639/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor
	?	CP009273	3614214 =	0 (0.000)					coding (1663/4236 nt)	rhsB	Rhs family putative polymorphic toxin, putative neighboring cell growth inhibitor

TGGAGCCGTTACGGTCAGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACA  >  CP009273/3614148‑3614280                                                                   |                                                                   gtgccggaagcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgg                                                                    <  1:11238818‑M2/1‑1 (MQ=255) gtgccggaagcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgg                                                                    <  1:1166185‑M2/1‑1 (MQ=255) gtgccggaagcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgg                                                                    <  1:23482401‑M2/1‑1 (MQ=255) gtgccggaagcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgg                                                                    <  1:3336603‑M2/1‑1 (MQ=255) gtgccggaagcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgg                                                                    <  1:3349313‑M2/1‑1 (MQ=255)  tgccggaagcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgGa                                                                   >  1:5107394‑M2/66‑67 (MQ=255)  tgccagaagcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgGa                                                                   >  1:2795023‑M2/66‑67 (MQ=255)     cggaagcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgGAAcgt                                                               <  1:17074185‑M2/6‑2 (MQ=255)     cggaagcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgGAAcgt                                                               <  1:6712418‑M2/6‑2 (MQ=255)     cggaagcggaggcggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgGAAcgt                                                               <  1:4781102‑M2/6‑2 (MQ=255)      ggcagcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgGACCGCt                                                              <  1:21897754‑M2/7‑1 (MQ=255)         agcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgGACCGCTTCg                                                           >  1:21220049‑M2/59‑68 (MQ=255)         agcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgGACCGCTTCg                                                           >  1:22031041‑M2/59‑68 (MQ=255)         agcggatgaggtgctgcctgcgccgctgccgccgtaccgggtactgaccgggctggtgGACCGCTTCg                                                           >  1:23428044‑M2/59‑68 (MQ=255)                              gccgcagccgccgtacccggtactgcccgggctggttGACCGCTTCGGGCAGATGACGGCGGTGCAcc                                      <  1:9362160‑M2/31‑1 (MQ=255)                                         cgtaccgggtactgaccgggctggtgGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAggg                           <  1:11295205‑M2/42‑1 (MQ=255)                                               gggtactcaccgggctggtgGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAg                      <  1:27924771‑M2/47‑1 (MQ=255)                                                                   GACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACa  >  1:28402260‑M2/1‑67 (MQ=255)                                                                   GACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACa  >  1:27890876‑M2/1‑67 (MQ=255)                                                                   |                                                                   TGGAGCCGTTACGGTCAGTTGCTGAGCTTCACCGACTGTTCCGGTTATGTAACCCGTTATGACCATGACCGCTTCGGGCAGATGACGGCGGTGCACCGCGAGGAAGGGCTGAGTCAGTACCGCGCATACGACA  >  CP009273/3614148‑3614280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.